Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 AC079140.4-201ENST00000507448 529 ntBASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 AP006294.2-201ENST00000641667 209 ntBASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC33.84■■■■□ 3.01
COL17A1Q9UMD9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 APTR-203ENST00000430801 583 ntTSL 5 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
COL17A1Q9UMD9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 RARRES2P4-201ENST00000514074 484 ntBASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 AC105036.2-201ENST00000569468 176 ntBASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3.01
COL17A1Q9UMD9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC33.82■■■■□ 3
COL17A1Q9UMD9 AL161729.1-201ENST00000604104 1402 ntBASIC33.82■■■■□ 3
COL17A1Q9UMD9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC33.82■■■■□ 3
COL17A1Q9UMD9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC33.82■■■■□ 3
COL17A1Q9UMD9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC33.82■■■■□ 3
COL17A1Q9UMD9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
COL17A1Q9UMD9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC33.82■■■■□ 3
COL17A1Q9UMD9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC33.82■■■■□ 3
COL17A1Q9UMD9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC33.82■■■■□ 3
COL17A1Q9UMD9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
COL17A1Q9UMD9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
COL17A1Q9UMD9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC33.82■■■■□ 3
COL17A1Q9UMD9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC33.81■■■■□ 3
COL17A1Q9UMD9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC33.81■■■■□ 3
COL17A1Q9UMD9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC33.81■■■■□ 3
COL17A1Q9UMD9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC33.81■■■■□ 3
COL17A1Q9UMD9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC33.81■■■■□ 3
COL17A1Q9UMD9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC33.81■■■■□ 3
COL17A1Q9UMD9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC33.81■■■■□ 3
COL17A1Q9UMD9 AC104187.1-201ENST00000607510 612 ntBASIC33.81■■■■□ 3
COL17A1Q9UMD9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
COL17A1Q9UMD9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
COL17A1Q9UMD9 ADM-205ENST00000528544 586 ntTSL 2 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC33.8■■■■□ 3
COL17A1Q9UMD9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 MARS-234ENST00000630571 216 ntTSL 5 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 MARS-235ENST00000630803 183 ntTSL 3 BASIC33.8■■■■□ 3
COL17A1Q9UMD9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC33.79■■■■□ 3
COL17A1Q9UMD9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC33.79■■■■□ 3
COL17A1Q9UMD9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
COL17A1Q9UMD9 RPS2P4-201ENST00000476944 856 ntBASIC33.79■■■■□ 3
COL17A1Q9UMD9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC33.79■■■■□ 3
COL17A1Q9UMD9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
COL17A1Q9UMD9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC33.78■■■■□ 3
COL17A1Q9UMD9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
COL17A1Q9UMD9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC33.78■■■■□ 3
COL17A1Q9UMD9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC33.78■■■■□ 3
COL17A1Q9UMD9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
COL17A1Q9UMD9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC33.77■■■■□ 3
COL17A1Q9UMD9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC33.77■■■■□ 3
COL17A1Q9UMD9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC33.77■■■■□ 3
COL17A1Q9UMD9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC33.77■■■■□ 3
COL17A1Q9UMD9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
COL17A1Q9UMD9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC33.77■■■■□ 3
COL17A1Q9UMD9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC33.77■■■■□ 3
COL17A1Q9UMD9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
COL17A1Q9UMD9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC33.76■■■■□ 3
COL17A1Q9UMD9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC33.76■■■■□ 3
COL17A1Q9UMD9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC33.76■■■■□ 3
COL17A1Q9UMD9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC33.76■■■■□ 3
COL17A1Q9UMD9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
COL17A1Q9UMD9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
COL17A1Q9UMD9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 MYCNOS-205ENST00000641950 531 ntBASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
COL17A1Q9UMD9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC33.74■■■□□ 2.99
COL17A1Q9UMD9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC33.74■■■□□ 2.99
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms