Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC011298.3-201ENST00000615796 283 ntBASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 AC136469.2-201ENST00000623944 1028 ntBASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.9■□□□□ 0.94
UBE3DQ7Z6J8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
UBE3DQ7Z6J8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
UBE3DQ7Z6J8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 AC010525.1-201ENST00000585559 441 ntBASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
UBE3DQ7Z6J8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 AC127496.7-201ENST00000625110 1798 ntBASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 OR2I1P-207ENST00000453522 948 ntBASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
UBE3DQ7Z6J8 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 AC096631.2-201ENST00000436136 790 ntBASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 AC024257.2-201ENST00000549699 147 ntBASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 AL136162.1-201ENST00000607711 1078 ntBASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 AL031602.1-201ENST00000633169 911 ntBASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UBE3DQ7Z6J8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 GUSBP5-202ENST00000510805 1989 ntBASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
UBE3DQ7Z6J8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
UBE3DQ7Z6J8 AL117328.2-201ENST00000624617 1940 ntBASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 MIR4767-201ENST00000582827 78 ntBASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 AC110285.6-201ENST00000617652 491 ntBASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 AC080038.3-201ENST00000623346 1952 ntBASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms