Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXN3O00409 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.59■■□□□ 1.37
FOXN3O00409 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.59■■□□□ 1.37
FOXN3O00409 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXN3O00409 AC139530.1-201ENST00000575312 1977 ntBASIC23.59■■□□□ 1.37
FOXN3O00409 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
FOXN3O00409 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXN3O00409 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
FOXN3O00409 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.59■■□□□ 1.37
FOXN3O00409 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
FOXN3O00409 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.58■■□□□ 1.37
FOXN3O00409 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
FOXN3O00409 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
FOXN3O00409 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
FOXN3O00409 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
FOXN3O00409 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.58■■□□□ 1.37
FOXN3O00409 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.58■■□□□ 1.37
FOXN3O00409 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
FOXN3O00409 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.36
FOXN3O00409 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
FOXN3O00409 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
FOXN3O00409 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
FOXN3O00409 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.57■■□□□ 1.36
FOXN3O00409 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.57■■□□□ 1.36
FOXN3O00409 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.57■■□□□ 1.36
FOXN3O00409 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.57■■□□□ 1.36
FOXN3O00409 pRNA.6-201ENST00000610482 90 ntBASIC23.57■■□□□ 1.36
FOXN3O00409 pRNA.5-201ENST00000612139 90 ntBASIC23.57■■□□□ 1.36
FOXN3O00409 pRNA.11-201ENST00000618423 90 ntBASIC23.57■■□□□ 1.36
FOXN3O00409 pRNA.13-201ENST00000619112 90 ntBASIC23.57■■□□□ 1.36
FOXN3O00409 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
FOXN3O00409 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
FOXN3O00409 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
FOXN3O00409 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
FOXN3O00409 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.56■■□□□ 1.36
FOXN3O00409 MIR4466-201ENST00000606121 54 ntBASIC23.56■■□□□ 1.36
FOXN3O00409 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.56■■□□□ 1.36
FOXN3O00409 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.56■■□□□ 1.36
FOXN3O00409 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
FOXN3O00409 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
FOXN3O00409 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
FOXN3O00409 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
FOXN3O00409 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
FOXN3O00409 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.55■■□□□ 1.36
FOXN3O00409 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.55■■□□□ 1.36
FOXN3O00409 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.55■■□□□ 1.36
FOXN3O00409 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
FOXN3O00409 LINC00565-201ENST00000562710 2331 ntBASIC23.55■■□□□ 1.36
FOXN3O00409 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
FOXN3O00409 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXN3O00409 AC133637.1-201ENST00000624115 1537 ntBASIC23.54■■□□□ 1.36
FOXN3O00409 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.54■■□□□ 1.36
FOXN3O00409 SRD5A1P1-201ENST00000442297 786 ntBASIC23.54■■□□□ 1.36
FOXN3O00409 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
FOXN3O00409 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.54■■□□□ 1.36
FOXN3O00409 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
FOXN3O00409 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXN3O00409 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXN3O00409 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXN3O00409 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.53■■□□□ 1.36
FOXN3O00409 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.53■■□□□ 1.36
FOXN3O00409 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.53■■□□□ 1.36
FOXN3O00409 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 MIR3181-201ENST00000578512 73 ntBASIC23.53■■□□□ 1.36
FOXN3O00409 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.53■■□□□ 1.36
FOXN3O00409 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
FOXN3O00409 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
FOXN3O00409 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
FOXN3O00409 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.52■■□□□ 1.36
FOXN3O00409 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.52■■□□□ 1.36
FOXN3O00409 AC137767.1-201ENST00000602918 1920 ntBASIC23.52■■□□□ 1.36
FOXN3O00409 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.52■■□□□ 1.36
FOXN3O00409 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.52■■□□□ 1.36
FOXN3O00409 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.52■■□□□ 1.36
FOXN3O00409 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.52■■□□□ 1.36
FOXN3O00409 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
FOXN3O00409 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms