Protein–RNA interactions for Protein: Q9Y252

RNF6, E3 ubiquitin-protein ligase RNF6, humanhuman

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF6Q9Y252 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF6Q9Y252 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF6Q9Y252 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF6Q9Y252 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
RNF6Q9Y252 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF6Q9Y252 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RNF6Q9Y252 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF6Q9Y252 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF6Q9Y252 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF6Q9Y252 AL161729.1-201ENST00000604104 1402 ntBASIC20.66■□□□□ 0.9
RNF6Q9Y252 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF6Q9Y252 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF6Q9Y252 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF6Q9Y252 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF6Q9Y252 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
RNF6Q9Y252 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF6Q9Y252 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF6Q9Y252 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF6Q9Y252 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF6Q9Y252 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RNF6Q9Y252 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
RNF6Q9Y252 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
RNF6Q9Y252 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF6Q9Y252 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF6Q9Y252 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNF6Q9Y252 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF6Q9Y252 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF6Q9Y252 PBX2P1-201ENST00000493219 1291 ntBASIC20.64■□□□□ 0.89
RNF6Q9Y252 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.64■□□□□ 0.89
RNF6Q9Y252 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.64■□□□□ 0.89
RNF6Q9Y252 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RNF6Q9Y252 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNF6Q9Y252 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF6Q9Y252 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RNF6Q9Y252 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RNF6Q9Y252 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.63■□□□□ 0.89
RNF6Q9Y252 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
RNF6Q9Y252 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF6Q9Y252 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 AC106739.1-201ENST00000617035 715 ntBASIC20.62■□□□□ 0.89
RNF6Q9Y252 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF6Q9Y252 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.62■□□□□ 0.89
RNF6Q9Y252 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.61■□□□□ 0.89
RNF6Q9Y252 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF6Q9Y252 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.61■□□□□ 0.89
RNF6Q9Y252 AC242852.2-201ENST00000615738 1807 ntBASIC20.61■□□□□ 0.89
RNF6Q9Y252 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RNF6Q9Y252 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF6Q9Y252 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF6Q9Y252 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF6Q9Y252 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RNF6Q9Y252 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF6Q9Y252 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF6Q9Y252 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RNF6Q9Y252 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF6Q9Y252 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF6Q9Y252 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF6Q9Y252 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.59■□□□□ 0.89
RNF6Q9Y252 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF6Q9Y252 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 UNC93B3-201ENST00000308076 687 ntBASIC20.59■□□□□ 0.89
RNF6Q9Y252 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF6Q9Y252 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms