Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BLOC1S4Q9NUP1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BLOC1S4Q9NUP1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
BLOC1S4Q9NUP1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
BLOC1S4Q9NUP1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
BLOC1S4Q9NUP1 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.64■■□□□ 1.54
BLOC1S4Q9NUP1 AC092171.4-201ENST00000609130 632 ntBASIC24.64■■□□□ 1.54
BLOC1S4Q9NUP1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
BLOC1S4Q9NUP1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
BLOC1S4Q9NUP1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
BLOC1S4Q9NUP1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 ESRRAP2-201ENST00000418437 1549 ntBASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
BLOC1S4Q9NUP1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.61■■□□□ 1.53
BLOC1S4Q9NUP1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.61■■□□□ 1.53
BLOC1S4Q9NUP1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
BLOC1S4Q9NUP1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
BLOC1S4Q9NUP1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
BLOC1S4Q9NUP1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 SYT6-210ENST00000641643 1587 ntBASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
BLOC1S4Q9NUP1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 DUX4L19-201ENST00000557448 1267 ntBASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 LINC01960-201ENST00000563759 1884 ntBASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 AC127496.7-201ENST00000625110 1798 ntBASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
BLOC1S4Q9NUP1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 AC008406.3-201ENST00000620001 1374 ntBASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 AL138724.1-201ENST00000606771 1088 ntBASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
BLOC1S4Q9NUP1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.58■■□□□ 1.52
BLOC1S4Q9NUP1 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 GUSBP5-202ENST00000510805 1989 ntBASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.57■■□□□ 1.52
BLOC1S4Q9NUP1 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms