Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 AC087742.1-201ENST00000575880 1738 ntBASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 SYT6-210ENST00000641643 1587 ntBASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.97■□□□□ 0.95
UBE3DQ7Z6J8 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 DUX4L19-201ENST00000557448 1267 ntBASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 AC233723.2-201ENST00000623798 2106 ntBASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3DQ7Z6J8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.95■□□□□ 0.95
UBE3DQ7Z6J8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
UBE3DQ7Z6J8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 AL138724.1-201ENST00000606771 1088 ntBASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3DQ7Z6J8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 ESRRAP2-201ENST00000418437 1549 ntBASIC20.94■□□□□ 0.94
UBE3DQ7Z6J8 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 UNC93B3-201ENST00000308076 687 ntBASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3DQ7Z6J8 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
UBE3DQ7Z6J8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 LINC01960-201ENST00000563759 1884 ntBASIC20.91■□□□□ 0.94
UBE3DQ7Z6J8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms