Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.06■□□□□ 0.96
SDC1P18827 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC1P18827 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.06■□□□□ 0.96
SDC1P18827 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC1P18827 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SDC1P18827 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SDC1P18827 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 C17orf82-201ENST00000623772 1530 ntBASIC21.05■□□□□ 0.96
SDC1P18827 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.05■□□□□ 0.96
SDC1P18827 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC1P18827 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SDC1P18827 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SDC1P18827 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.04■□□□□ 0.96
SDC1P18827 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC1P18827 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.04■□□□□ 0.96
SDC1P18827 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SDC1P18827 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
SDC1P18827 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC1P18827 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SDC1P18827 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SDC1P18827 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC1P18827 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.04■□□□□ 0.96
SDC1P18827 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.04■□□□□ 0.96
SDC1P18827 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC1P18827 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SDC1P18827 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDC1P18827 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC1P18827 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC1P18827 AC092053.2-201ENST00000640557 1818 ntBASIC21.03■□□□□ 0.96
SDC1P18827 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SDC1P18827 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.03■□□□□ 0.96
SDC1P18827 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.03■□□□□ 0.96
SDC1P18827 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDC1P18827 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
SDC1P18827 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SDC1P18827 LINC01960-201ENST00000563759 1884 ntBASIC21.03■□□□□ 0.96
SDC1P18827 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SDC1P18827 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SDC1P18827 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SDC1P18827 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDC1P18827 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SDC1P18827 UNC93B8-201ENST00000511903 705 ntBASIC21.02■□□□□ 0.96
SDC1P18827 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDC1P18827 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SDC1P18827 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.02■□□□□ 0.96
SDC1P18827 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
SDC1P18827 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SDC1P18827 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SDC1P18827 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.01■□□□□ 0.95
SDC1P18827 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.01■□□□□ 0.95
SDC1P18827 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC1P18827 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SDC1P18827 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21■□□□□ 0.95
SDC1P18827 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
SDC1P18827 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SDC1P18827 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21■□□□□ 0.95
SDC1P18827 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SDC1P18827 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SDC1P18827 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21■□□□□ 0.95
SDC1P18827 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SDC1P18827 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SDC1P18827 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21■□□□□ 0.95
SDC1P18827 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SDC1P18827 AC004687.1-201ENST00000579003 1625 ntBASIC21■□□□□ 0.95
SDC1P18827 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.99■□□□□ 0.95
SDC1P18827 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC1P18827 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.99■□□□□ 0.95
SDC1P18827 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC1P18827 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SDC1P18827 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.99■□□□□ 0.95
SDC1P18827 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 MIR6724-1-201ENST00000616420 92 ntBASIC20.98■□□□□ 0.95
SDC1P18827 MIR6724-2-201ENST00000616483 92 ntBASIC20.98■□□□□ 0.95
SDC1P18827 MIR6724-4-201ENST00000617390 92 ntBASIC20.98■□□□□ 0.95
SDC1P18827 MIR6724-3-201ENST00000622482 92 ntBASIC20.98■□□□□ 0.95
SDC1P18827 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC1P18827 C11orf96-202ENST00000528572 1834 ntBASIC20.98■□□□□ 0.95
SDC1P18827 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms