Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS9D1Q9Y2B5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 AL117328.2-201ENST00000624617 1940 ntBASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS9D1Q9Y2B5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS9D1Q9Y2B5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 AL356441.2-201ENST00000443009 864 ntBASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 AL499627.2-201ENST00000606283 725 ntBASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS9D1Q9Y2B5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 AC092171.4-201ENST00000609130 632 ntBASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 AC127496.7-201ENST00000625110 1798 ntBASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
VPS9D1Q9Y2B5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.93■■□□□ 1.1
VPS9D1Q9Y2B5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS9D1Q9Y2B5 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 SRD5A1P1-201ENST00000442297 786 ntBASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS9D1Q9Y2B5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 GUSBP5-202ENST00000510805 1989 ntBASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS9D1Q9Y2B5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms