Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC005181.1-201ENST00000604782 1256 ntBASIC34.14■■■■□ 3.06
COL17A1Q9UMD9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC34.13■■■■□ 3.05
COL17A1Q9UMD9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 MIR6089-201ENST00000616698 64 ntBASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
COL17A1Q9UMD9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 KRT18P29-201ENST00000397031 1267 ntBASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC34.11■■■■□ 3.05
COL17A1Q9UMD9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
COL17A1Q9UMD9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 AC133041.1-202ENST00000642053 222 ntBASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC34.09■■■■□ 3.05
COL17A1Q9UMD9 SLC29A4P1-201ENST00000398760 971 ntBASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 AC231657.2-201ENST00000624556 255 ntBASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
COL17A1Q9UMD9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC34.07■■■■□ 3.05
COL17A1Q9UMD9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC34.07■■■■□ 3.05
COL17A1Q9UMD9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.05
COL17A1Q9UMD9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC34.07■■■■□ 3.05
COL17A1Q9UMD9 TESC-206ENST00000541210 936 ntTSL 3 BASIC34.07■■■■□ 3.05
COL17A1Q9UMD9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC34.07■■■■□ 3.04
COL17A1Q9UMD9 AL121749.1-202ENST00000609313 2153 ntBASIC34.07■■■■□ 3.04
COL17A1Q9UMD9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.04
COL17A1Q9UMD9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
COL17A1Q9UMD9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC34.07■■■■□ 3.04
COL17A1Q9UMD9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC34.06■■■■□ 3.04
COL17A1Q9UMD9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC34.06■■■■□ 3.04
COL17A1Q9UMD9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC34.06■■■■□ 3.04
COL17A1Q9UMD9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 SMUG1P1-201ENST00000590640 811 ntBASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 BX005040.4-201ENST00000637145 1518 ntBASIC34.05■■■■□ 3.04
COL17A1Q9UMD9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
COL17A1Q9UMD9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC34.03■■■■□ 3.04
COL17A1Q9UMD9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
COL17A1Q9UMD9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC34.03■■■■□ 3.04
COL17A1Q9UMD9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC34.03■■■■□ 3.04
COL17A1Q9UMD9 GCSHP5-201ENST00000443090 522 ntBASIC34.02■■■■□ 3.04
COL17A1Q9UMD9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC34.02■■■■□ 3.04
COL17A1Q9UMD9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
COL17A1Q9UMD9 AC010501.1-201ENST00000606270 1962 ntBASIC34.02■■■■□ 3.04
COL17A1Q9UMD9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
COL17A1Q9UMD9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC34.01■■■■□ 3.04
COL17A1Q9UMD9 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
COL17A1Q9UMD9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC34.01■■■■□ 3.03
COL17A1Q9UMD9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC34.01■■■■□ 3.03
COL17A1Q9UMD9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC34■■■■□ 3.03
COL17A1Q9UMD9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
COL17A1Q9UMD9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC34■■■■□ 3.03
COL17A1Q9UMD9 AC007322.1-201ENST00000426983 750 ntBASIC34■■■■□ 3.03
COL17A1Q9UMD9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC34■■■■□ 3.03
COL17A1Q9UMD9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC34■■■■□ 3.03
COL17A1Q9UMD9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC34■■■■□ 3.03
COL17A1Q9UMD9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC34■■■■□ 3.03
COL17A1Q9UMD9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC34■■■■□ 3.03
COL17A1Q9UMD9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
COL17A1Q9UMD9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC34■■■■□ 3.03
COL17A1Q9UMD9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC33.99■■■■□ 3.03
COL17A1Q9UMD9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC33.99■■■■□ 3.03
COL17A1Q9UMD9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC33.99■■■■□ 3.03
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms