Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL136116.3-201ENST00000402907 1138 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 MIR3181-201ENST00000578512 73 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 pRNA.6-201ENST00000610482 90 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 pRNA.5-201ENST00000612139 90 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 pRNA.11-201ENST00000618423 90 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 pRNA.13-201ENST00000619112 90 ntBASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UBE3DQ7Z6J8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 AC004687.1-201ENST00000579003 1625 ntBASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
UBE3DQ7Z6J8 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.04■□□□□ 0.96
UBE3DQ7Z6J8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBE3DQ7Z6J8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
UBE3DQ7Z6J8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
UBE3DQ7Z6J8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
UBE3DQ7Z6J8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
UBE3DQ7Z6J8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 AC133637.1-201ENST00000624115 1537 ntBASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 SERBP1P1-201ENST00000396021 1160 ntBASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
UBE3DQ7Z6J8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 AC092171.4-201ENST00000609130 632 ntBASIC21■□□□□ 0.95
UBE3DQ7Z6J8 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBE3DQ7Z6J8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBE3DQ7Z6J8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 AC008406.3-201ENST00000620001 1374 ntBASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.98■□□□□ 0.95
UBE3DQ7Z6J8 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms