Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.51■□□□□ 0.71
MMP28Q9H239 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
MMP28Q9H239 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 AC026310.3-201ENST00000625186 2373 ntBASIC19.5■□□□□ 0.71
MMP28Q9H239 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.5■□□□□ 0.71
MMP28Q9H239 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
MMP28Q9H239 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
MMP28Q9H239 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 C11orf96-202ENST00000528572 1834 ntBASIC19.5■□□□□ 0.71
MMP28Q9H239 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
MMP28Q9H239 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP28Q9H239 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
MMP28Q9H239 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP28Q9H239 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
MMP28Q9H239 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.49■□□□□ 0.71
MMP28Q9H239 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP28Q9H239 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP28Q9H239 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
MMP28Q9H239 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP28Q9H239 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
MMP28Q9H239 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP28Q9H239 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
MMP28Q9H239 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP28Q9H239 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP28Q9H239 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP28Q9H239 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP28Q9H239 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.47■□□□□ 0.71
MMP28Q9H239 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP28Q9H239 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.47■□□□□ 0.71
MMP28Q9H239 AC018755.3-202ENST00000596210 929 ntBASIC19.47■□□□□ 0.71
MMP28Q9H239 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MMP28Q9H239 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP28Q9H239 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.47■□□□□ 0.71
MMP28Q9H239 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
MMP28Q9H239 KRT18P60-201ENST00000312876 1297 ntBASIC19.46■□□□□ 0.71
MMP28Q9H239 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
MMP28Q9H239 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
MMP28Q9H239 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MMP28Q9H239 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
MMP28Q9H239 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.45■□□□□ 0.7
MMP28Q9H239 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
MMP28Q9H239 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MMP28Q9H239 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 ESRRAP2-201ENST00000418437 1549 ntBASIC19.44■□□□□ 0.7
MMP28Q9H239 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
MMP28Q9H239 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MMP28Q9H239 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.44■□□□□ 0.7
MMP28Q9H239 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MMP28Q9H239 TSPY13P-201ENST00000338964 914 ntBASIC19.43■□□□□ 0.7
MMP28Q9H239 DUX4L9-201ENST00000449051 1259 ntBASIC19.43■□□□□ 0.7
MMP28Q9H239 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms