Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGCS2P54868 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
HMGCS2P54868 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
HMGCS2P54868 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.96■■□□□ 1.75
HMGCS2P54868 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.96■■□□□ 1.75
HMGCS2P54868 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.96■■□□□ 1.75
HMGCS2P54868 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
HMGCS2P54868 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
HMGCS2P54868 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.96■■□□□ 1.75
HMGCS2P54868 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
HMGCS2P54868 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
HMGCS2P54868 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.95■■□□□ 1.74
HMGCS2P54868 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.74
HMGCS2P54868 AP005435.1-201ENST00000529293 1178 ntBASIC25.95■■□□□ 1.74
HMGCS2P54868 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.95■■□□□ 1.74
HMGCS2P54868 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
HMGCS2P54868 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
HMGCS2P54868 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
HMGCS2P54868 AC142381.3-201ENST00000568208 1670 ntBASIC25.94■■□□□ 1.74
HMGCS2P54868 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC25.94■■□□□ 1.74
HMGCS2P54868 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.94■■□□□ 1.74
HMGCS2P54868 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.94■■□□□ 1.74
HMGCS2P54868 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
HMGCS2P54868 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGCS2P54868 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
HMGCS2P54868 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HMGCS2P54868 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
HMGCS2P54868 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC25.93■■□□□ 1.74
HMGCS2P54868 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
HMGCS2P54868 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
HMGCS2P54868 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
HMGCS2P54868 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
HMGCS2P54868 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGCS2P54868 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
HMGCS2P54868 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.92■■□□□ 1.74
HMGCS2P54868 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.92■■□□□ 1.74
HMGCS2P54868 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.92■■□□□ 1.74
HMGCS2P54868 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 AC105233.4-201ENST00000642045 216 ntBASIC25.92■■□□□ 1.74
HMGCS2P54868 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.92■■□□□ 1.74
HMGCS2P54868 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.92■■□□□ 1.74
HMGCS2P54868 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
HMGCS2P54868 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.91■■□□□ 1.74
HMGCS2P54868 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
HMGCS2P54868 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
HMGCS2P54868 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
HMGCS2P54868 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
HMGCS2P54868 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.91■■□□□ 1.74
HMGCS2P54868 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.91■■□□□ 1.74
HMGCS2P54868 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.9■■□□□ 1.74
HMGCS2P54868 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.9■■□□□ 1.74
HMGCS2P54868 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGCS2P54868 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.9■■□□□ 1.74
HMGCS2P54868 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HMGCS2P54868 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.89■■□□□ 1.74
HMGCS2P54868 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.89■■□□□ 1.74
HMGCS2P54868 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
HMGCS2P54868 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
HMGCS2P54868 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HMGCS2P54868 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC25.88■■□□□ 1.73
HMGCS2P54868 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
HMGCS2P54868 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HMGCS2P54868 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.88■■□□□ 1.73
HMGCS2P54868 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.88■■□□□ 1.73
HMGCS2P54868 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HMGCS2P54868 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HMGCS2P54868 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.88■■□□□ 1.73
HMGCS2P54868 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC25.88■■□□□ 1.73
HMGCS2P54868 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGCS2P54868 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.87■■□□□ 1.73
HMGCS2P54868 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGCS2P54868 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGCS2P54868 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
HMGCS2P54868 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC25.87■■□□□ 1.73
HMGCS2P54868 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGCS2P54868 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
HMGCS2P54868 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGCS2P54868 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGCS2P54868 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.86■■□□□ 1.73
HMGCS2P54868 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
HMGCS2P54868 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms