Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
POLR2J3Q9H1A7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 ESRRAP2-201ENST00000418437 1549 ntBASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 AC127496.7-201ENST00000625110 1798 ntBASIC20.57■□□□□ 0.88
POLR2J3Q9H1A7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 YBX1P4-201ENST00000392794 808 ntBASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 SNX5-217ENST00000606557 1087 ntBASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.56■□□□□ 0.88
POLR2J3Q9H1A7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 AC137630.3-201ENST00000607245 391 ntBASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
POLR2J3Q9H1A7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 AC103834.1-201ENST00000520383 144 ntBASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR2J3Q9H1A7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
POLR2J3Q9H1A7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 AC103724.3-201ENST00000564481 992 ntBASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
POLR2J3Q9H1A7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
POLR2J3Q9H1A7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 AL033527.3-201ENST00000566366 1196 ntBASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
POLR2J3Q9H1A7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
POLR2J3Q9H1A7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
POLR2J3Q9H1A7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.5■□□□□ 0.87
POLR2J3Q9H1A7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
POLR2J3Q9H1A7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.5■□□□□ 0.87
POLR2J3Q9H1A7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms