Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDH1Q08174 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDH1Q08174 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
PCDH1Q08174 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PCDH1Q08174 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDH1Q08174 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDH1Q08174 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 GUSBP5-201ENST00000418136 578 ntBASIC21.52■■□□□ 1.04
PCDH1Q08174 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.52■■□□□ 1.04
PCDH1Q08174 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDH1Q08174 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDH1Q08174 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDH1Q08174 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
PCDH1Q08174 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
PCDH1Q08174 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH1Q08174 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PCDH1Q08174 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDH1Q08174 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDH1Q08174 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH1Q08174 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.51■■□□□ 1.03
PCDH1Q08174 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDH1Q08174 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH1Q08174 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH1Q08174 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH1Q08174 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH1Q08174 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDH1Q08174 C17orf82-201ENST00000623772 1530 ntBASIC21.5■■□□□ 1.03
PCDH1Q08174 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PCDH1Q08174 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH1Q08174 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH1Q08174 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDH1Q08174 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDH1Q08174 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH1Q08174 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH1Q08174 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PCDH1Q08174 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDH1Q08174 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PCDH1Q08174 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.49■■□□□ 1.03
PCDH1Q08174 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH1Q08174 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH1Q08174 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
PCDH1Q08174 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCDH1Q08174 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH1Q08174 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDH1Q08174 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH1Q08174 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH1Q08174 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDH1Q08174 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PCDH1Q08174 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH1Q08174 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PCDH1Q08174 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDH1Q08174 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH1Q08174 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDH1Q08174 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH1Q08174 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH1Q08174 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDH1Q08174 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH1Q08174 ESRRAP2-201ENST00000418437 1549 ntBASIC21.46■■□□□ 1.03
PCDH1Q08174 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDH1Q08174 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH1Q08174 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDH1Q08174 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDH1Q08174 AC079834.2-201ENST00000609776 1949 ntBASIC21.45■■□□□ 1.02
PCDH1Q08174 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDH1Q08174 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PCDH1Q08174 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.02
PCDH1Q08174 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 KRT16P3-201ENST00000439127 1283 ntBASIC21.45■■□□□ 1.02
PCDH1Q08174 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
PCDH1Q08174 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDH1Q08174 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDH1Q08174 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PCDH1Q08174 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDH1Q08174 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH1Q08174 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDH1Q08174 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH1Q08174 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH1Q08174 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDH1Q08174 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PCDH1Q08174 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDH1Q08174 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms