Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CLDN5-201ENST00000403084 2357 ntBASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 AC097381.1-201ENST00000429019 1296 ntBASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 AC136469.2-201ENST00000623944 1028 ntBASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA3Q9Y5H0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 AL161729.1-201ENST00000604104 1402 ntBASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHGA3Q9Y5H0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHGA3Q9Y5H0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
PCDHGA3Q9Y5H0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHGA3Q9Y5H0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDHGA3Q9Y5H0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 AC008764.7-201ENST00000593779 1081 ntBASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDHGA3Q9Y5H0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 LINC00543-201ENST00000567234 1845 ntBASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 AC079834.2-201ENST00000609776 1949 ntBASIC21.61■■□□□ 1.05
PCDHGA3Q9Y5H0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 IRS3P-201ENST00000223076 1006 ntBASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 AC099791.1-201ENST00000416440 715 ntBASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA3Q9Y5H0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
PCDHGA3Q9Y5H0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.58■■□□□ 1.05
PCDHGA3Q9Y5H0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms