Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.75■□□□□ 0.75
SKA3Q8IX90 AL356740.2-201ENST00000601559 647 ntBASIC19.75■□□□□ 0.75
SKA3Q8IX90 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SKA3Q8IX90 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA3Q8IX90 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
SKA3Q8IX90 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 MIR3621-201ENST00000580529 85 ntBASIC19.74■□□□□ 0.75
SKA3Q8IX90 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.74■□□□□ 0.75
SKA3Q8IX90 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA3Q8IX90 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SKA3Q8IX90 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.73■□□□□ 0.75
SKA3Q8IX90 AC009102.2-201ENST00000606772 1639 ntBASIC19.73■□□□□ 0.75
SKA3Q8IX90 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 AC068473.5-201ENST00000616428 2072 ntBASIC19.73■□□□□ 0.75
SKA3Q8IX90 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.73■□□□□ 0.75
SKA3Q8IX90 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA3Q8IX90 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA3Q8IX90 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SKA3Q8IX90 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA3Q8IX90 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.72■□□□□ 0.75
SKA3Q8IX90 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA3Q8IX90 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA3Q8IX90 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.71■□□□□ 0.75
SKA3Q8IX90 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.71■□□□□ 0.75
SKA3Q8IX90 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.71■□□□□ 0.75
SKA3Q8IX90 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.71■□□□□ 0.75
SKA3Q8IX90 AC079630.1-202ENST00000618127 1840 ntBASIC19.71■□□□□ 0.75
SKA3Q8IX90 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SKA3Q8IX90 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.71■□□□□ 0.75
SKA3Q8IX90 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SKA3Q8IX90 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SKA3Q8IX90 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA3Q8IX90 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA3Q8IX90 AC092068.2-201ENST00000590491 1708 ntBASIC19.7■□□□□ 0.74
SKA3Q8IX90 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SKA3Q8IX90 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA3Q8IX90 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA3Q8IX90 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA3Q8IX90 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.68■□□□□ 0.74
SKA3Q8IX90 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms