Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
HMGB3O15347 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB3O15347 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB3O15347 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB3O15347 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB3O15347 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.47
HMGB3O15347 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HMGB3O15347 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB3O15347 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB3O15347 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB3O15347 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGB3O15347 DUX4L11-201ENST00000611504 1267 ntBASIC18.01■□□□□ 0.47
HMGB3O15347 DUX4L12-201ENST00000614593 1267 ntBASIC18.01■□□□□ 0.47
HMGB3O15347 DUX4L14-201ENST00000621227 1267 ntBASIC18.01■□□□□ 0.47
HMGB3O15347 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB3O15347 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB3O15347 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB3O15347 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB3O15347 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB3O15347 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18■□□□□ 0.47
HMGB3O15347 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB3O15347 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
HMGB3O15347 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
HMGB3O15347 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB3O15347 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB3O15347 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB3O15347 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB3O15347 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGB3O15347 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB3O15347 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB3O15347 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGB3O15347 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGB3O15347 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGB3O15347 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB3O15347 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB3O15347 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB3O15347 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HMGB3O15347 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGB3O15347 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
HMGB3O15347 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGB3O15347 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB3O15347 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB3O15347 BCL2-203ENST00000589955 5011 ntBASIC17.96■□□□□ 0.47
HMGB3O15347 AL024507.2-201ENST00000606070 2574 ntBASIC17.96■□□□□ 0.47
HMGB3O15347 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB3O15347 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB3O15347 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.96■□□□□ 0.47
HMGB3O15347 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 DUSP8P3-201ENST00000399571 1760 ntBASIC17.96■□□□□ 0.47
HMGB3O15347 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB3O15347 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
HMGB3O15347 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.46
HMGB3O15347 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HMGB3O15347 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGB3O15347 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGB3O15347 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms