RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 DCAF8L2P0C7V8 631 aa31.54■■■□□ 2.64
COL18A1-202ENST00000355480 SUPT5HO00267 1087 aaKnown RBP29.67■■■□□ 2.34
COL18A1-202ENST00000355480 SHROOM4Q9ULL8 1493 aa29.06■■■□□ 2.24
COL18A1-202ENST00000355480 NISCHQ9Y2I1 1504 aa29.04■■■□□ 2.24
COL18A1-202ENST00000355480 EHMT2Q96KQ7 1210 aa28.99■■■□□ 2.23
COL18A1-202ENST00000355480 APLP2Q06481 763 aa28.49■■■□□ 2.15
COL18A1-202ENST00000355480 PELP1Q8IZL8 1130 aaKnown RBP28.36■■■□□ 2.13
COL18A1-202ENST00000355480 FAM9AQ8IZU1 332 aaPredicted RBP28.18■■■□□ 2.1
COL18A1-202ENST00000355480 TTBK1Q5TCY1 1321 aaPredicted RBP27.99■■■□□ 2.07
COL18A1-202ENST00000355480 RANGAP1P46060 587 aaPredicted RBP27.77■■■□□ 2.04
COL18A1-202ENST00000355480 PCGF6Q9BYE7 350 aa27.61■■■□□ 2.01
COL18A1-202ENST00000355480 ATP1B4Q9UN42 357 aaPredicted RBP27.6■■■□□ 2.01
COL18A1-202ENST00000355480 TRIM41Q8WV44 630 aa27.45■■□□□ 1.98
COL18A1-202ENST00000355480 CCER1Q8TC90 406 aaPredicted RBP27.29■■□□□ 1.96
COL18A1-202ENST00000355480 UBTFP17480 764 aaKnown RBP27.28■■□□□ 1.96
COL18A1-202ENST00000355480 ERICH6Q7L0X2 663 aa27.24■■□□□ 1.95
COL18A1-202ENST00000355480 CENPBP07199 599 aaPredicted RBP27.2■■□□□ 1.95
COL18A1-202ENST00000355480 ZEB1P37275 1124 aaPredicted RBP27.14■■□□□ 1.93
COL18A1-202ENST00000355480 NEFLP07196 543 aa26.84■■□□□ 1.89
COL18A1-202ENST00000355480 YTHDC1Q96MU7 727 aaKnown RBP26.75■■□□□ 1.87
COL18A1-202ENST00000355480 PPARGC1BQ86YN6 1023 aaKnown RBP26.73■■□□□ 1.87
COL18A1-202ENST00000355480 MYT1LQ9UL68 1186 aa26.71■■□□□ 1.87
COL18A1-202ENST00000355480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.63■■□□□ 1.85
COL18A1-202ENST00000355480 HNRNPUL2Q1KMD3 747 aaKnown RBP26.63■■□□□ 1.85
COL18A1-202ENST00000355480 ITGAEP38570 1179 aa26.51■■□□□ 1.83
COL18A1-202ENST00000355480 POLR3GLQ9BT43 218 aa26.46■■□□□ 1.83
COL18A1-202ENST00000355480 TRIM26Q12899 539 aaPredicted RBP26.3■■□□□ 1.8
COL18A1-202ENST00000355480 CHIC1Q5VXU3 224 aa26.23■■□□□ 1.79
COL18A1-202ENST00000355480 DAXXQ9UER7 740 aaPredicted RBP26.19■■□□□ 1.78
COL18A1-202ENST00000355480 CNGB1Q14028 1251 aaPredicted RBP26.18■■□□□ 1.78
COL18A1-202ENST00000355480 SLC4A1APQ9BWU0 796 aaKnown RBP26.08■■□□□ 1.76
COL18A1-202ENST00000355480 LOC105371045A0A1W2PR82 267 aa26.04■■□□□ 1.76
COL18A1-202ENST00000355480 HRCP23327 699 aa25.96■■□□□ 1.75
COL18A1-202ENST00000355480 MYT1Q01538 1121 aa25.79■■□□□ 1.72
COL18A1-202ENST00000355480 FAM50AQ14320 339 aaKnown RBP25.78■■□□□ 1.72
COL18A1-202ENST00000355480 TRIM52Q96A61 297 aa25.71■■□□□ 1.71
COL18A1-202ENST00000355480 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.74e-11■■■□□ 17.5
COL18A1-202ENST00000355480 CLSPNQ9HAW4 1339 aa25.68■■□□□ 1.7
COL18A1-202ENST00000355480 ZNF316A6NFI3 1004 aaPredicted RBP25.55■■□□□ 1.68
COL18A1-202ENST00000355480 ABCC9O60706 1549 aa25.54■■□□□ 1.68
COL18A1-202ENST00000355480 NEUROD1Q13562 356 aa25.52■■□□□ 1.68
COL18A1-202ENST00000355480 FBLN2P98095 1184 aa25.51■■□□□ 1.67
COL18A1-202ENST00000355480 DIEXFQ68CQ4 756 aaKnown RBP25.47■■□□□ 1.67
COL18A1-202ENST00000355480 ZNF326Q5BKZ1 582 aaKnown RBP25.46■■□□□ 1.67
COL18A1-202ENST00000355480 RTL5Q5HYW3 569 aaPredicted RBP25.39■■□□□ 1.66
COL18A1-202ENST00000355480 ZBTB47Q9UFB7 747 aaPredicted RBP25.26■■□□□ 1.63
COL18A1-202ENST00000355480 SLC24A1O60721 1099 aa25.24■■□□□ 1.63
COL18A1-202ENST00000355480 BCANQ96GW7 911 aa25.24■■□□□ 1.63
COL18A1-202ENST00000355480 ANP32CO43423 234 aa25.21■■□□□ 1.63
COL18A1-202ENST00000355480 ARID3CA6NKF2 412 aa25.18■■□□□ 1.62
COL18A1-202ENST00000355480 P3H3Q8IVL6 736 aa25.13■■□□□ 1.61
COL18A1-202ENST00000355480 BCL11AQ9H165 835 aa25.1■■□□□ 1.61
COL18A1-202ENST00000355480 CANXP27824 592 aaKnown RBP25.09■■□□□ 1.61
COL18A1-202ENST00000355480 NEFMP07197 916 aa25.08■■□□□ 1.61
COL18A1-202ENST00000355480 ZNF777Q9ULD5 760 aaPredicted RBP25.03■■□□□ 1.6
COL18A1-202ENST00000355480 CDK11AQ9UQ88 783 aaPredicted RBP24.95■■□□□ 1.58
COL18A1-202ENST00000355480 ESF1Q9H501 851 aaKnown RBP24.91■■□□□ 1.58
COL18A1-202ENST00000355480 CSRNP3Q8WYN3 585 aa24.86■■□□□ 1.57
COL18A1-202ENST00000355480 GTF3C3Q9Y5Q9 886 aa24.84■■□□□ 1.57
COL18A1-202ENST00000355480 STAG3Q9UJ98 1225 aa24.78■■□□□ 1.56
COL18A1-202ENST00000355480 CHGAP10645 457 aaKnown RBP24.77■■□□□ 1.56
COL18A1-202ENST00000355480 PLPPR3Q6T4P5 718 aa24.76■■□□□ 1.55
COL18A1-202ENST00000355480 NPM1P06748 294 aaKnown RBP eCLIP24.68■■□□□ 1.54
COL18A1-202ENST00000355480 ANP32AP39687 249 aaKnown RBP24.57■■□□□ 1.52
COL18A1-202ENST00000355480 TONSLQ96HA7 1378 aa24.57■■□□□ 1.52
COL18A1-202ENST00000355480 NPM2Q86SE8 214 aaKnown RBP24.54■■□□□ 1.52
COL18A1-202ENST00000355480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.49■■□□□ 1.517e-9■□□□□ 11.2
COL18A1-202ENST00000355480 SCRIBQ14160 1630 aa24.47■■□□□ 1.51
COL18A1-202ENST00000355480 CHIC2Q9UKJ5 165 aa24.43■■□□□ 1.5
COL18A1-202ENST00000355480 HSP90AA1P07900 732 aaKnown RBP24.42■■□□□ 1.5
COL18A1-202ENST00000355480 FAM9BQ8IZU0 186 aa24.39■■□□□ 1.5
COL18A1-202ENST00000355480 SALL2Q9Y467 1007 aaPredicted RBP24.39■■□□□ 1.49
COL18A1-202ENST00000355480 HNRNPUQ00839 825 aaKnown RBP eCLIP24.37■■□□□ 1.49
COL18A1-202ENST00000355480 ACIN1Q9UKV3 1341 aaKnown RBP24.36■■□□□ 1.49
COL18A1-202ENST00000355480 DDX10Q13206 875 aaKnown RBP24.34■■□□□ 1.49
COL18A1-202ENST00000355480 UPF2Q9HAU5 1272 aaKnown RBP24.33■■□□□ 1.49
COL18A1-202ENST00000355480 FKBP8Q14318 412 aa24.33■■□□□ 1.48
COL18A1-202ENST00000355480 TSPY4P0CV99 314 aa24.32■■□□□ 1.48
COL18A1-202ENST00000355480 TSPY10P0CW01 314 aa24.32■■□□□ 1.48
COL18A1-202ENST00000355480 SCAF1Q9H7N4 1312 aaKnown RBP24.3■■□□□ 1.48
COL18A1-202ENST00000355480 ANP32BQ92688 251 aaKnown RBP24.3■■□□□ 1.48
COL18A1-202ENST00000355480 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
COL18A1-202ENST00000355480 TMC1Q8TDI8 760 aa24.28■■□□□ 1.48
COL18A1-202ENST00000355480 CHMP7Q8WUX9 453 aaPredicted RBP24.25■■□□□ 1.47
COL18A1-202ENST00000355480 WDR43Q15061 677 aaKnown RBP eCLIP24.24■■□□□ 1.473e-6■■□□□ 12.1
COL18A1-202ENST00000355480 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.19■■□□□ 1.46
COL18A1-202ENST00000355480 A0A0G2JS52 829 aa24.19■■□□□ 1.46
COL18A1-202ENST00000355480 MTUS2Q5JR59 1369 aa24.19■■□□□ 1.46
COL18A1-202ENST00000355480 SENP3Q9H4L4 574 aaPredicted RBP24.13■■□□□ 1.45
COL18A1-202ENST00000355480 CCDC136Q96JN2 1154 aa24.12■■□□□ 1.45
COL18A1-202ENST00000355480 ZBTB7CA1YPR0 619 aa24.11■■□□□ 1.45
COL18A1-202ENST00000355480 PLEKHG5O94827 1062 aa24.11■■□□□ 1.45
COL18A1-202ENST00000355480 MRS2Q9HD23 443 aa24.1■■□□□ 1.45
COL18A1-202ENST00000355480 PPP1R15AO75807 674 aaPredicted RBP24.08■■□□□ 1.44
COL18A1-202ENST00000355480 C14orf37Q86TY3 774 aa24.07■■□□□ 1.44
COL18A1-202ENST00000355480 KCNH8Q96L42 1107 aa24.07■■□□□ 1.44
COL18A1-202ENST00000355480 MYH16Q9H6N6 1097 aa24.01■■□□□ 1.43
COL18A1-202ENST00000355480 RRP7BPQ9NSQ0 103 aa24■■□□□ 1.43
COL18A1-202ENST00000355480 HIRIP3Q9BW71 556 aaPredicted RBP23.97■■□□□ 1.43
COL18A1-202ENST00000355480 PLEKHD1A6NEE1 506 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms