Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX4Q9NQI0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.82■■□□□ 1.88
DDX4Q9NQI0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
DDX4Q9NQI0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.81■■□□□ 1.88
DDX4Q9NQI0 SLC47A1P1-202ENST00000449666 945 ntBASIC26.81■■□□□ 1.88
DDX4Q9NQI0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
DDX4Q9NQI0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
DDX4Q9NQI0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX4Q9NQI0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.78■■□□□ 1.88
DDX4Q9NQI0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.78■■□□□ 1.88
DDX4Q9NQI0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.78■■□□□ 1.88
DDX4Q9NQI0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX4Q9NQI0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX4Q9NQI0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
DDX4Q9NQI0 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.76■■□□□ 1.88
DDX4Q9NQI0 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
DDX4Q9NQI0 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
DDX4Q9NQI0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
DDX4Q9NQI0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
DDX4Q9NQI0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 AC104564.3-201ENST00000582367 638 ntBASIC26.75■■□□□ 1.87
DDX4Q9NQI0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
DDX4Q9NQI0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 AC126544.1-201ENST00000580842 1059 ntBASIC26.74■■□□□ 1.87
DDX4Q9NQI0 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
DDX4Q9NQI0 AC133637.1-201ENST00000624115 1537 ntBASIC26.74■■□□□ 1.87
DDX4Q9NQI0 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 AL162430.1-201ENST00000480705 870 ntBASIC26.73■■□□□ 1.87
DDX4Q9NQI0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 SP2-202ENST00000613139 908 ntTSL 5 BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
DDX4Q9NQI0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 AL499627.2-201ENST00000606283 725 ntBASIC26.72■■□□□ 1.87
DDX4Q9NQI0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
DDX4Q9NQI0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
DDX4Q9NQI0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms