Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.73■□□□□ 0.75
MMP28Q9H239 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MMP28Q9H239 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.72■□□□□ 0.75
MMP28Q9H239 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
MMP28Q9H239 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
MMP28Q9H239 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MMP28Q9H239 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.72■□□□□ 0.75
MMP28Q9H239 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MMP28Q9H239 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.72■□□□□ 0.75
MMP28Q9H239 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
MMP28Q9H239 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MMP28Q9H239 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MMP28Q9H239 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.71■□□□□ 0.75
MMP28Q9H239 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 NTF6A-201ENST00000591175 560 ntBASIC19.71■□□□□ 0.75
MMP28Q9H239 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MMP28Q9H239 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.71■□□□□ 0.75
MMP28Q9H239 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.71■□□□□ 0.75
MMP28Q9H239 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MMP28Q9H239 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP28Q9H239 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
MMP28Q9H239 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP28Q9H239 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP28Q9H239 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MMP28Q9H239 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MMP28Q9H239 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP28Q9H239 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MMP28Q9H239 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP28Q9H239 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.7■□□□□ 0.74
MMP28Q9H239 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MMP28Q9H239 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
MMP28Q9H239 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP28Q9H239 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP28Q9H239 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MMP28Q9H239 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MMP28Q9H239 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP28Q9H239 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.69■□□□□ 0.74
MMP28Q9H239 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MMP28Q9H239 RNF165-205ENST00000588679 2904 ntBASIC19.69■□□□□ 0.74
MMP28Q9H239 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
MMP28Q9H239 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP28Q9H239 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MMP28Q9H239 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP28Q9H239 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MMP28Q9H239 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP28Q9H239 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MMP28Q9H239 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.68■□□□□ 0.74
MMP28Q9H239 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP28Q9H239 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP28Q9H239 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP28Q9H239 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
MMP28Q9H239 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.67■□□□□ 0.74
MMP28Q9H239 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
MMP28Q9H239 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.67■□□□□ 0.74
MMP28Q9H239 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 AC026202.3-201ENST00000600805 1127 ntBASIC19.67■□□□□ 0.74
MMP28Q9H239 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
MMP28Q9H239 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP28Q9H239 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.67■□□□□ 0.74
MMP28Q9H239 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MMP28Q9H239 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MMP28Q9H239 AC092068.2-201ENST00000590491 1708 ntBASIC19.66■□□□□ 0.74
MMP28Q9H239 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.66■□□□□ 0.74
MMP28Q9H239 RAP2CP1-202ENST00000605179 643 ntBASIC19.66■□□□□ 0.74
MMP28Q9H239 AC012354.3-201ENST00000623734 483 ntBASIC19.66■□□□□ 0.74
MMP28Q9H239 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MMP28Q9H239 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MMP28Q9H239 AC242852.2-201ENST00000615738 1807 ntBASIC19.65■□□□□ 0.74
MMP28Q9H239 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MMP28Q9H239 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms