Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC61Q9Y6R9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC31.22■■■□□ 2.59
CCDC61Q9Y6R9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
CCDC61Q9Y6R9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC61Q9Y6R9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC31.22■■■□□ 2.59
CCDC61Q9Y6R9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 AC126544.1-201ENST00000580842 1059 ntBASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC61Q9Y6R9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 SLC47A1P1-202ENST00000449666 945 ntBASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC31.2■■■□□ 2.59
CCDC61Q9Y6R9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.58
CCDC61Q9Y6R9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
CCDC61Q9Y6R9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC31.19■■■□□ 2.58
CCDC61Q9Y6R9 AC022211.4-201ENST00000625094 2161 ntBASIC31.19■■■□□ 2.58
CCDC61Q9Y6R9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC31.18■■■□□ 2.58
CCDC61Q9Y6R9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC31.18■■■□□ 2.58
CCDC61Q9Y6R9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC61Q9Y6R9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
CCDC61Q9Y6R9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC31.17■■■□□ 2.58
CCDC61Q9Y6R9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC31.17■■■□□ 2.58
CCDC61Q9Y6R9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
CCDC61Q9Y6R9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC31.17■■■□□ 2.58
CCDC61Q9Y6R9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC31.17■■■□□ 2.58
CCDC61Q9Y6R9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 TSPY26P-201ENST00000476365 1326 ntBASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC61Q9Y6R9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC61Q9Y6R9 AP003733.4-201ENST00000623785 1697 ntBASIC31.14■■■□□ 2.58
CCDC61Q9Y6R9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC31.14■■■□□ 2.58
CCDC61Q9Y6R9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.57
CCDC61Q9Y6R9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 AC135731.1-201ENST00000569415 2548 ntBASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 YBX1P1-201ENST00000445822 960 ntBASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC61Q9Y6R9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 AC034268.1-201ENST00000441047 882 ntBASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC61Q9Y6R9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC61Q9Y6R9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC61Q9Y6R9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC61Q9Y6R9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC61Q9Y6R9 AL031602.1-201ENST00000633169 911 ntBASIC31.11■■■□□ 2.57
CCDC61Q9Y6R9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 AL499627.2-201ENST00000606283 725 ntBASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC31.1■■■□□ 2.57
CCDC61Q9Y6R9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms