Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.34■■□□□ 1.81
HMGCS2P54868 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
HMGCS2P54868 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HMGCS2P54868 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.34■■□□□ 1.81
HMGCS2P54868 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.34■■□□□ 1.81
HMGCS2P54868 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.33■■□□□ 1.81
HMGCS2P54868 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.33■■□□□ 1.81
HMGCS2P54868 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGCS2P54868 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGCS2P54868 SLC47A1P1-202ENST00000449666 945 ntBASIC26.33■■□□□ 1.81
HMGCS2P54868 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HMGCS2P54868 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.33■■□□□ 1.81
HMGCS2P54868 TSPY26P-201ENST00000476365 1326 ntBASIC26.33■■□□□ 1.81
HMGCS2P54868 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGCS2P54868 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.32■■□□□ 1.8
HMGCS2P54868 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HMGCS2P54868 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGCS2P54868 AC141586.4-201ENST00000624558 1573 ntBASIC26.32■■□□□ 1.8
HMGCS2P54868 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.32■■□□□ 1.8
HMGCS2P54868 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HMGCS2P54868 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.32■■□□□ 1.8
HMGCS2P54868 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.32■■□□□ 1.8
HMGCS2P54868 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGCS2P54868 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGCS2P54868 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGCS2P54868 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGCS2P54868 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.31■■□□□ 1.8
HMGCS2P54868 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HMGCS2P54868 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC26.31■■□□□ 1.8
HMGCS2P54868 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC26.31■■□□□ 1.8
HMGCS2P54868 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
HMGCS2P54868 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
HMGCS2P54868 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
HMGCS2P54868 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
HMGCS2P54868 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HMGCS2P54868 HACD1-201ENST00000326961 773 ntTSL 2 BASIC26.3■■□□□ 1.8
HMGCS2P54868 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC26.3■■□□□ 1.8
HMGCS2P54868 AL031602.1-201ENST00000633169 911 ntBASIC26.3■■□□□ 1.8
HMGCS2P54868 AC135731.1-201ENST00000569415 2548 ntBASIC26.3■■□□□ 1.8
HMGCS2P54868 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
HMGCS2P54868 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
HMGCS2P54868 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGCS2P54868 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
HMGCS2P54868 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC26.29■■□□□ 1.8
HMGCS2P54868 AC034268.1-201ENST00000441047 882 ntBASIC26.29■■□□□ 1.8
HMGCS2P54868 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
HMGCS2P54868 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
HMGCS2P54868 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HMGCS2P54868 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HMGCS2P54868 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.28■■□□□ 1.8
HMGCS2P54868 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC26.28■■□□□ 1.8
HMGCS2P54868 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC26.28■■□□□ 1.8
HMGCS2P54868 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC26.28■■□□□ 1.8
HMGCS2P54868 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HMGCS2P54868 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC26.27■■□□□ 1.8
HMGCS2P54868 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.27■■□□□ 1.8
HMGCS2P54868 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC26.27■■□□□ 1.8
HMGCS2P54868 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.27■■□□□ 1.8
HMGCS2P54868 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HMGCS2P54868 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGCS2P54868 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.26■■□□□ 1.79
HMGCS2P54868 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HMGCS2P54868 NME4-202ENST00000382940 766 ntTSL 3 BASIC26.26■■□□□ 1.79
HMGCS2P54868 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
HMGCS2P54868 YBX1P1-201ENST00000445822 960 ntBASIC26.26■■□□□ 1.79
HMGCS2P54868 NME4-211ENST00000620944 1193 ntTSL 2 BASIC26.26■■□□□ 1.79
HMGCS2P54868 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.26■■□□□ 1.79
HMGCS2P54868 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.25■■□□□ 1.79
HMGCS2P54868 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.25■■□□□ 1.79
HMGCS2P54868 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGCS2P54868 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.25■■□□□ 1.79
HMGCS2P54868 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGCS2P54868 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HMGCS2P54868 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HMGCS2P54868 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC26.25■■□□□ 1.79
HMGCS2P54868 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.25■■□□□ 1.79
HMGCS2P54868 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.24■■□□□ 1.79
HMGCS2P54868 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC26.24■■□□□ 1.79
HMGCS2P54868 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC26.24■■□□□ 1.79
HMGCS2P54868 IKBKGP1-201ENST00000612193 1073 ntBASIC26.24■■□□□ 1.79
HMGCS2P54868 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HMGCS2P54868 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
HMGCS2P54868 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGCS2P54868 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.23■■□□□ 1.79
HMGCS2P54868 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGCS2P54868 AC022211.4-201ENST00000625094 2161 ntBASIC26.23■■□□□ 1.79
HMGCS2P54868 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGCS2P54868 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC26.23■■□□□ 1.79
HMGCS2P54868 AICDA-202ENST00000537228 667 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGCS2P54868 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HMGCS2P54868 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.23■■□□□ 1.79
HMGCS2P54868 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
HMGCS2P54868 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.23■■□□□ 1.79
HMGCS2P54868 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.23■■□□□ 1.79
HMGCS2P54868 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms