Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 TMC6-223ENST00000592594 551 ntTSL 414.89□□□□□ -0.032e-9■■□□□ 13.5
CDC40O60508 ULK1-205ENST00000541761 1262 ntTSL 214.16□□□□□ -0.142e-9■■□□□ 13.5
CDC40O60508 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.152e-9■■□□□ 13.5
CDC40O60508 TMC6-207ENST00000586697 571 ntTSL 413.63□□□□□ -0.232e-9■■□□□ 13.5
CDC40O60508 LENG8-203ENST00000421200 594 ntTSL 313.56□□□□□ -0.242e-9■■□□□ 13.5
CDC40O60508 TMC6-221ENST00000592063 743 ntTSL 513.02□□□□□ -0.332e-9■■□□□ 13.5
CDC40O60508 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.42e-9■■□□□ 13.5
CDC40O60508 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.512e-9■■□□□ 13.5
CDC40O60508 NDRG1-224ENST00000522738 530 ntTSL 510.68□□□□□ -0.72e-9■■□□□ 13.5
CDC40O60508 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.852e-9■■□□□ 13.5
CDC40O60508 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.192e-6■■□□□ 13.4
CDC40O60508 PLXNB1-203ENST00000449094 3863 ntTSL 211.45□□□□□ -0.582e-6■■□□□ 13.4
CDC40O60508 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.32□□□□□ -0.281e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.361e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-218ENST00000510678 1996 ntTSL 512.51□□□□□ -0.411e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-223ENST00000514332 2444 ntTSL 212.37□□□□□ -0.431e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC12.01□□□□□ -0.491e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.511e-9■■□□□ 13.4
CDC40O60508 PLCXD1-208ENST00000445062 555 ntTSL 420.14■□□□□ 0.814e-8■■□□□ 13.4
CDC40O60508 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.334e-8■■□□□ 13.4
CDC40O60508 PLCXD1-206ENST00000430923 587 ntAPPRIS ALT2 TSL 214.15□□□□□ -0.144e-8■■□□□ 13.4
CDC40O60508 PLCXD1-211ENST00000484611 540 ntTSL 413.98□□□□□ -0.174e-8■■□□□ 13.4
CDC40O60508 PLCXD1-205ENST00000429181 469 ntTSL 413.74□□□□□ -0.214e-8■■□□□ 13.4
CDC40O60508 PLCXD1-209ENST00000447472 587 ntAPPRIS ALT2 TSL 413.52□□□□□ -0.254e-8■■□□□ 13.4
CDC40O60508 PLCXD1-204ENST00000415337 579 ntAPPRIS ALT2 TSL 513.15□□□□□ -0.34e-8■■□□□ 13.4
CDC40O60508 PLCXD1-207ENST00000443019 284 ntTSL 512.95□□□□□ -0.344e-8■■□□□ 13.4
CDC40O60508 PLCXD1-210ENST00000448477 828 ntTSL 212.89□□□□□ -0.354e-8■■□□□ 13.4
CDC40O60508 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.54e-8■■□□□ 13.4
CDC40O60508 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.544e-8■■□□□ 13.4
CDC40O60508 TAF1D-216ENST00000532235 334 ntTSL 314.74□□□□□ -0.055e-7■■□□□ 13.4
CDC40O60508 TAF1D-217ENST00000532455 565 ntTSL 414.71□□□□□ -0.055e-7■■□□□ 13.4
CDC40O60508 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.115e-7■■□□□ 13.4
CDC40O60508 TAF1D-220ENST00000534770 737 ntTSL 314.14□□□□□ -0.155e-7■■□□□ 13.4
CDC40O60508 TAF1D-211ENST00000529508 538 ntTSL 213.43□□□□□ -0.265e-7■■□□□ 13.4
CDC40O60508 TAF1D-208ENST00000527690 335 ntTSL 32.15□□□□□ -2.075e-7■■□□□ 13.4
CDC40O60508 FTCD-211ENST00000494498 840 ntTSL 317.91■□□□□ 0.462e-6■■□□□ 13.4
CDC40O60508 FTCD-206ENST00000460011 1260 ntTSL 1 (best)17.74■□□□□ 0.432e-6■■□□□ 13.4
CDC40O60508 LPCAT1-202ENST00000475622 5610 ntTSL 517.33■□□□□ 0.372e-6■■□□□ 13.4
CDC40O60508 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.362e-6■■□□□ 13.4
CDC40O60508 CDK6-204ENST00000473078 386 ntTSL 21.48□□□□□ -2.172e-8■■□□□ 13.4
CDC40O60508 EEF1D-217ENST00000526786 1246 ntTSL 221.22■□□□□ 0.993e-9■■□□□ 13.4
CDC40O60508 EEF1D-241ENST00000531931 614 ntTSL 321.22■□□□□ 0.993e-9■■□□□ 13.4
CDC40O60508 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.953e-9■■□□□ 13.4
CDC40O60508 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.923e-9■■□□□ 13.4
CDC40O60508 EEF1D-212ENST00000525695 907 ntTSL 520.76■□□□□ 0.913e-9■■□□□ 13.4
CDC40O60508 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.55■□□□□ 0.883e-9■■□□□ 13.4
CDC40O60508 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.623e-9■■□□□ 13.4
CDC40O60508 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.493e-9■■□□□ 13.4
CDC40O60508 EEF1D-235ENST00000530848 688 ntTSL 317.89■□□□□ 0.453e-9■■□□□ 13.4
CDC40O60508 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.343e-9■■□□□ 13.4
CDC40O60508 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.06■□□□□ 0.323e-9■■□□□ 13.4
CDC40O60508 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.273e-9■■□□□ 13.4
CDC40O60508 EEF1D-249ENST00000533749 633 ntTSL 516.27■□□□□ 0.23e-9■■□□□ 13.4
CDC40O60508 EEF1D-224ENST00000529007 861 ntTSL 216.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-206ENST00000524397 957 ntTSL 316.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.13e-9■■□□□ 13.4
CDC40O60508 EEF1D-250ENST00000533833 831 ntTSL 515.51■□□□□ 0.073e-9■■□□□ 13.4
CDC40O60508 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.083e-9■■□□□ 13.4
CDC40O60508 EEF1D-230ENST00000530191 853 ntTSL 314.15□□□□□ -0.143e-9■■□□□ 13.4
CDC40O60508 EEF1D-251ENST00000534232 817 ntTSL 513.89□□□□□ -0.193e-9■■□□□ 13.4
CDC40O60508 EEF1D-252ENST00000534377 617 ntTSL 213.67□□□□□ -0.223e-9■■□□□ 13.4
CDC40O60508 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.293e-9■■□□□ 13.4
CDC40O60508 EEF1D-247ENST00000533204 842 ntTSL 212.75□□□□□ -0.373e-9■■□□□ 13.4
CDC40O60508 EEF1D-253ENST00000534380 1001 ntTSL 512.47□□□□□ -0.413e-9■■□□□ 13.4
CDC40O60508 EEF1D-236ENST00000531218 787 ntTSL 312.47□□□□□ -0.413e-9■■□□□ 13.4
CDC40O60508 EEF1D-215ENST00000526340 770 ntTSL 312.4□□□□□ -0.423e-9■■□□□ 13.4
CDC40O60508 EEF1D-248ENST00000533494 758 ntTSL 511.72□□□□□ -0.533e-9■■□□□ 13.4
CDC40O60508 EEF1D-226ENST00000529516 473 ntTSL 38.45□□□□□ -1.063e-9■■□□□ 13.4
CDC40O60508 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC6.5□□□□□ -1.373e-7■■□□□ 13.2
CDC40O60508 LMF2-203ENST00000504717 1233 ntTSL 524.39■■□□□ 1.491e-6■■□□□ 13.2
CDC40O60508 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.91■■□□□ 1.261e-6■■□□□ 13.2
CDC40O60508 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.22■■□□□ 1.151e-6■■□□□ 13.2
CDC40O60508 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.921e-6■■□□□ 13.2
CDC40O60508 NECAB3-221ENST00000607055 554 ntTSL 419.67■□□□□ 0.741e-6■■□□□ 13.2
CDC40O60508 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.521e-6■■□□□ 13.2
CDC40O60508 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.97■□□□□ 0.472e-8■■□□□ 13.2
CDC40O60508 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.431e-6■■□□□ 13.2
CDC40O60508 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.371e-6■■□□□ 13.2
CDC40O60508 NECAB3-220ENST00000606699 1022 ntTSL 217.26■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 NECAB3-210ENST00000484824 596 ntTSL 217.26■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 FBXO41-202ENST00000519873 580 ntTSL 417.24■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.321e-6■■□□□ 13.2
CDC40O60508 FLNA-218ENST00000498491 914 ntTSL 516.06■□□□□ 0.161e-6■■□□□ 13.2
CDC40O60508 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.112e-8■■□□□ 13.2
CDC40O60508 NECAB3-214ENST00000493590 625 ntTSL 515.71■□□□□ 0.111e-6■■□□□ 13.2
CDC40O60508 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.5□□□□□ -0.091e-6■■□□□ 13.2
CDC40O60508 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-6■■□□□ 13.2
CDC40O60508 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.111e-6■■□□□ 13.2
CDC40O60508 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.08□□□□□ -0.161e-6■■□□□ 13.2
CDC40O60508 SEPT9-226ENST00000589920 580 ntTSL 213.97□□□□□ -0.171e-6■■□□□ 13.2
CDC40O60508 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.221e-6■■□□□ 13.2
CDC40O60508 RPL3-212ENST00000467105 1396 ntTSL 1 (best)13.2□□□□□ -0.31e-6■■□□□ 13.2
CDC40O60508 SEPT9-209ENST00000585638 565 ntTSL 412.94□□□□□ -0.341e-6■■□□□ 13.2
CDC40O60508 RPL3-215ENST00000481985 557 ntTSL 212.58□□□□□ -0.41e-6■■□□□ 13.2
CDC40O60508 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC12.55□□□□□ -0.42e-8■■□□□ 13.2
CDC40O60508 G2E3-212ENST00000553504 3796 ntTSL 5 BASIC12.2□□□□□ -0.461e-6■■□□□ 13.2
CDC40O60508 AC051619.6-201ENST00000558039 595 ntTSL 4 BASIC11.46□□□□□ -0.571e-6■■□□□ 13.2
CDC40O60508 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC11.44□□□□□ -0.582e-8■■□□□ 13.2
Retrieved 100 of 5,364 protein–RNA pairs in 28 ms