Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 TMC6-223ENST00000592594 551 ntTSL 414.89□□□□□ -0.032e-9■■□□□ 13.5
CDC40O60508 ULK1-205ENST00000541761 1262 ntTSL 214.16□□□□□ -0.142e-9■■□□□ 13.5
CDC40O60508 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.152e-9■■□□□ 13.5
CDC40O60508 TMC6-207ENST00000586697 571 ntTSL 413.63□□□□□ -0.232e-9■■□□□ 13.5
CDC40O60508 LENG8-203ENST00000421200 594 ntTSL 313.56□□□□□ -0.242e-9■■□□□ 13.5
CDC40O60508 TMC6-221ENST00000592063 743 ntTSL 513.02□□□□□ -0.332e-9■■□□□ 13.5
CDC40O60508 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.42e-9■■□□□ 13.5
CDC40O60508 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.512e-9■■□□□ 13.5
CDC40O60508 NDRG1-224ENST00000522738 530 ntTSL 510.68□□□□□ -0.72e-9■■□□□ 13.5
CDC40O60508 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.852e-9■■□□□ 13.5
CDC40O60508 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.192e-6■■□□□ 13.4
CDC40O60508 PLXNB1-203ENST00000449094 3863 ntTSL 211.45□□□□□ -0.582e-6■■□□□ 13.4
CDC40O60508 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.32□□□□□ -0.281e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.361e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-218ENST00000510678 1996 ntTSL 512.51□□□□□ -0.411e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-223ENST00000514332 2444 ntTSL 212.37□□□□□ -0.431e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC12.01□□□□□ -0.491e-9■■□□□ 13.4
CDC40O60508 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.511e-9■■□□□ 13.4
CDC40O60508 PLCXD1-208ENST00000445062 555 ntTSL 420.14■□□□□ 0.814e-8■■□□□ 13.4
CDC40O60508 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.334e-8■■□□□ 13.4
CDC40O60508 PLCXD1-206ENST00000430923 587 ntAPPRIS ALT2 TSL 214.15□□□□□ -0.144e-8■■□□□ 13.4
CDC40O60508 PLCXD1-211ENST00000484611 540 ntTSL 413.98□□□□□ -0.174e-8■■□□□ 13.4
CDC40O60508 PLCXD1-205ENST00000429181 469 ntTSL 413.74□□□□□ -0.214e-8■■□□□ 13.4
CDC40O60508 PLCXD1-209ENST00000447472 587 ntAPPRIS ALT2 TSL 413.52□□□□□ -0.254e-8■■□□□ 13.4
CDC40O60508 PLCXD1-204ENST00000415337 579 ntAPPRIS ALT2 TSL 513.15□□□□□ -0.34e-8■■□□□ 13.4
CDC40O60508 PLCXD1-207ENST00000443019 284 ntTSL 512.95□□□□□ -0.344e-8■■□□□ 13.4
CDC40O60508 PLCXD1-210ENST00000448477 828 ntTSL 212.89□□□□□ -0.354e-8■■□□□ 13.4
CDC40O60508 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.54e-8■■□□□ 13.4
CDC40O60508 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.544e-8■■□□□ 13.4
CDC40O60508 TAF1D-216ENST00000532235 334 ntTSL 314.74□□□□□ -0.055e-7■■□□□ 13.4
CDC40O60508 TAF1D-217ENST00000532455 565 ntTSL 414.71□□□□□ -0.055e-7■■□□□ 13.4
CDC40O60508 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.115e-7■■□□□ 13.4
CDC40O60508 TAF1D-220ENST00000534770 737 ntTSL 314.14□□□□□ -0.155e-7■■□□□ 13.4
CDC40O60508 TAF1D-211ENST00000529508 538 ntTSL 213.43□□□□□ -0.265e-7■■□□□ 13.4
CDC40O60508 TAF1D-208ENST00000527690 335 ntTSL 32.15□□□□□ -2.075e-7■■□□□ 13.4
CDC40O60508 FTCD-211ENST00000494498 840 ntTSL 317.91■□□□□ 0.462e-6■■□□□ 13.4
CDC40O60508 FTCD-206ENST00000460011 1260 ntTSL 1 (best)17.74■□□□□ 0.432e-6■■□□□ 13.4
CDC40O60508 LPCAT1-202ENST00000475622 5610 ntTSL 517.33■□□□□ 0.372e-6■■□□□ 13.4
CDC40O60508 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.362e-6■■□□□ 13.4
CDC40O60508 CDK6-204ENST00000473078 386 ntTSL 21.48□□□□□ -2.172e-8■■□□□ 13.4
CDC40O60508 EEF1D-217ENST00000526786 1246 ntTSL 221.22■□□□□ 0.993e-9■■□□□ 13.4
CDC40O60508 EEF1D-241ENST00000531931 614 ntTSL 321.22■□□□□ 0.993e-9■■□□□ 13.4
CDC40O60508 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.953e-9■■□□□ 13.4
CDC40O60508 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.923e-9■■□□□ 13.4
CDC40O60508 EEF1D-212ENST00000525695 907 ntTSL 520.76■□□□□ 0.913e-9■■□□□ 13.4
CDC40O60508 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.55■□□□□ 0.883e-9■■□□□ 13.4
CDC40O60508 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.623e-9■■□□□ 13.4
CDC40O60508 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.493e-9■■□□□ 13.4
CDC40O60508 EEF1D-235ENST00000530848 688 ntTSL 317.89■□□□□ 0.453e-9■■□□□ 13.4
CDC40O60508 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.343e-9■■□□□ 13.4
CDC40O60508 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.06■□□□□ 0.323e-9■■□□□ 13.4
CDC40O60508 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.273e-9■■□□□ 13.4
CDC40O60508 EEF1D-249ENST00000533749 633 ntTSL 516.27■□□□□ 0.23e-9■■□□□ 13.4
CDC40O60508 EEF1D-224ENST00000529007 861 ntTSL 216.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-206ENST00000524397 957 ntTSL 316.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.03■□□□□ 0.163e-9■■□□□ 13.4
CDC40O60508 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.13e-9■■□□□ 13.4
CDC40O60508 EEF1D-250ENST00000533833 831 ntTSL 515.51■□□□□ 0.073e-9■■□□□ 13.4
CDC40O60508 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.083e-9■■□□□ 13.4
CDC40O60508 EEF1D-230ENST00000530191 853 ntTSL 314.15□□□□□ -0.143e-9■■□□□ 13.4
CDC40O60508 EEF1D-251ENST00000534232 817 ntTSL 513.89□□□□□ -0.193e-9■■□□□ 13.4
CDC40O60508 EEF1D-252ENST00000534377 617 ntTSL 213.67□□□□□ -0.223e-9■■□□□ 13.4
CDC40O60508 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.293e-9■■□□□ 13.4
CDC40O60508 EEF1D-247ENST00000533204 842 ntTSL 212.75□□□□□ -0.373e-9■■□□□ 13.4
CDC40O60508 EEF1D-253ENST00000534380 1001 ntTSL 512.47□□□□□ -0.413e-9■■□□□ 13.4
CDC40O60508 EEF1D-236ENST00000531218 787 ntTSL 312.47□□□□□ -0.413e-9■■□□□ 13.4
CDC40O60508 EEF1D-215ENST00000526340 770 ntTSL 312.4□□□□□ -0.423e-9■■□□□ 13.4
CDC40O60508 EEF1D-248ENST00000533494 758 ntTSL 511.72□□□□□ -0.533e-9■■□□□ 13.4
CDC40O60508 EEF1D-226ENST00000529516 473 ntTSL 38.45□□□□□ -1.063e-9■■□□□ 13.4
CDC40O60508 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC6.5□□□□□ -1.373e-7■■□□□ 13.2
CDC40O60508 LMF2-203ENST00000504717 1233 ntTSL 524.39■■□□□ 1.491e-6■■□□□ 13.2
CDC40O60508 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.91■■□□□ 1.261e-6■■□□□ 13.2
CDC40O60508 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.22■■□□□ 1.151e-6■■□□□ 13.2
CDC40O60508 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.921e-6■■□□□ 13.2
CDC40O60508 NECAB3-221ENST00000607055 554 ntTSL 419.67■□□□□ 0.741e-6■■□□□ 13.2
CDC40O60508 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.521e-6■■□□□ 13.2
CDC40O60508 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.97■□□□□ 0.472e-8■■□□□ 13.2
CDC40O60508 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.431e-6■■□□□ 13.2
CDC40O60508 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.371e-6■■□□□ 13.2
CDC40O60508 NECAB3-220ENST00000606699 1022 ntTSL 217.26■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 NECAB3-210ENST00000484824 596 ntTSL 217.26■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 FBXO41-202ENST00000519873 580 ntTSL 417.24■□□□□ 0.351e-6■■□□□ 13.2
CDC40O60508 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.321e-6■■□□□ 13.2
CDC40O60508 FLNA-218ENST00000498491 914 ntTSL 516.06■□□□□ 0.161e-6■■□□□ 13.2
CDC40O60508 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.112e-8■■□□□ 13.2
CDC40O60508 NECAB3-214ENST00000493590 625 ntTSL 515.71■□□□□ 0.111e-6■■□□□ 13.2
CDC40O60508 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.5□□□□□ -0.091e-6■■□□□ 13.2
CDC40O60508 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-6■■□□□ 13.2
CDC40O60508 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.111e-6■■□□□ 13.2
CDC40O60508 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.08□□□□□ -0.161e-6■■□□□ 13.2
CDC40O60508 SEPT9-226ENST00000589920 580 ntTSL 213.97□□□□□ -0.171e-6■■□□□ 13.2
CDC40O60508 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.221e-6■■□□□ 13.2
CDC40O60508 RPL3-212ENST00000467105 1396 ntTSL 1 (best)13.2□□□□□ -0.31e-6■■□□□ 13.2
CDC40O60508 SEPT9-209ENST00000585638 565 ntTSL 412.94□□□□□ -0.341e-6■■□□□ 13.2
CDC40O60508 RPL3-215ENST00000481985 557 ntTSL 212.58□□□□□ -0.41e-6■■□□□ 13.2
CDC40O60508 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC12.55□□□□□ -0.42e-8■■□□□ 13.2
CDC40O60508 G2E3-212ENST00000553504 3796 ntTSL 5 BASIC12.2□□□□□ -0.461e-6■■□□□ 13.2
CDC40O60508 AC051619.6-201ENST00000558039 595 ntTSL 4 BASIC11.46□□□□□ -0.571e-6■■□□□ 13.2
CDC40O60508 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC11.44□□□□□ -0.582e-8■■□□□ 13.2
Retrieved 100 of 5,364 protein–RNA pairs in 30.9 ms