Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TMEM56-RWDD3S4R434 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 ESRRAP2-201ENST00000418437 1549 ntBASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 HES4-204ENST00000484667 667 ntTSL 3 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 AL022069.1-201ENST00000568025 1636 ntBASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.55■□□□□ 0.56
TMEM56-RWDD3S4R434 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 RPS2P7-201ENST00000447334 885 ntBASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMEM56-RWDD3S4R434 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 AL592295.1-201ENST00000400984 884 ntBASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 HES4-202ENST00000428771 1040 ntTSL 2 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 CEP120-209ENST00000515110 606 ntTSL 3 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 AC242852.2-201ENST00000615738 1807 ntBASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
TMEM56-RWDD3S4R434 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.52■□□□□ 0.56
TMEM56-RWDD3S4R434 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TMEM56-RWDD3S4R434 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TMEM56-RWDD3S4R434 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.52■□□□□ 0.55
TMEM56-RWDD3S4R434 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TMEM56-RWDD3S4R434 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 MIR639-201ENST00000384974 98 ntBASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.51■□□□□ 0.55
TMEM56-RWDD3S4R434 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.5■□□□□ 0.55
TMEM56-RWDD3S4R434 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TMEM56-RWDD3S4R434 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms