Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
PCDHB3Q9Y5E6 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB3Q9Y5E6 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHB3Q9Y5E6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 AL117332.1-201ENST00000622628 974 ntBASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PCDHB3Q9Y5E6 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 MIR3621-201ENST00000580529 85 ntBASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHB3Q9Y5E6 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHB3Q9Y5E6 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 SNX5-217ENST00000606557 1087 ntBASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 ABCB10P4-201ENST00000566803 2184 ntBASIC22.11■■□□□ 1.13
PCDHB3Q9Y5E6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHB3Q9Y5E6 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 AC079834.2-201ENST00000609776 1949 ntBASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB3Q9Y5E6 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 MIR6722-201ENST00000617286 78 ntBASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.08■■□□□ 1.13
PCDHB3Q9Y5E6 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDHB3Q9Y5E6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB3Q9Y5E6 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB3Q9Y5E6 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB3Q9Y5E6 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB3Q9Y5E6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHB3Q9Y5E6 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.06■■□□□ 1.12
PCDHB3Q9Y5E6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB3Q9Y5E6 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.06■■□□□ 1.12
PCDHB3Q9Y5E6 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PCDHB3Q9Y5E6 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
PCDHB3Q9Y5E6 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms