Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RHBDD3Q9Y3P4 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 KRT18P24-201ENST00000344739 1156 ntBASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 THA1P-201ENST00000590384 1145 ntBASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RHBDD3Q9Y3P4 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RHBDD3Q9Y3P4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.77■□□□□ 0.75
RHBDD3Q9Y3P4 KRT8P33-201ENST00000508125 1423 ntBASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 AC103834.1-201ENST00000520383 144 ntBASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 MIR4508-201ENST00000584178 70 ntBASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 ANOS2P-203ENST00000472227 1816 ntBASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.76■□□□□ 0.75
RHBDD3Q9Y3P4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.75■□□□□ 0.75
RHBDD3Q9Y3P4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 AL022069.1-201ENST00000568025 1636 ntBASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RHBDD3Q9Y3P4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 MIR4281-201ENST00000580852 62 ntBASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 AL161729.1-201ENST00000604104 1402 ntBASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
RHBDD3Q9Y3P4 DUSP8P3-201ENST00000399571 1760 ntBASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 YBX1P4-201ENST00000392794 808 ntBASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 AC092068.2-201ENST00000590491 1708 ntBASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
RHBDD3Q9Y3P4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms