Protein–RNA interactions for Protein: Q8N684

CPSF7, Cleavage and polyadenylation specificity factor subunit 7, humanhuman

Known RBP Predictions only

Length 471 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7Q8N684 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.13■■□□□ 1.13
CPSF7Q8N684 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF7Q8N684 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF7Q8N684 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.12■■□□□ 1.13
CPSF7Q8N684 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CPSF7Q8N684 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 AL451085.2-201ENST00000605085 799 ntBASIC22.12■■□□□ 1.13
CPSF7Q8N684 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CPSF7Q8N684 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF7Q8N684 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.12■■□□□ 1.13
CPSF7Q8N684 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
CPSF7Q8N684 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF7Q8N684 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CPSF7Q8N684 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF7Q8N684 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF7Q8N684 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF7Q8N684 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF7Q8N684 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.1■■□□□ 1.13
CPSF7Q8N684 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF7Q8N684 AL161729.1-201ENST00000604104 1402 ntBASIC22.1■■□□□ 1.13
CPSF7Q8N684 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CPSF7Q8N684 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF7Q8N684 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF7Q8N684 LINC00526-201ENST00000581067 1875 ntBASIC22.09■■□□□ 1.13
CPSF7Q8N684 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF7Q8N684 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF7Q8N684 YBX1P4-201ENST00000392794 808 ntBASIC22.09■■□□□ 1.13
CPSF7Q8N684 AC103834.1-201ENST00000520383 144 ntBASIC22.09■■□□□ 1.13
CPSF7Q8N684 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.09■■□□□ 1.13
CPSF7Q8N684 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF7Q8N684 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CPSF7Q8N684 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.08■■□□□ 1.13
CPSF7Q8N684 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CPSF7Q8N684 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CPSF7Q8N684 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CPSF7Q8N684 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.12
CPSF7Q8N684 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CPSF7Q8N684 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.07■■□□□ 1.12
CPSF7Q8N684 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
CPSF7Q8N684 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.07■■□□□ 1.12
CPSF7Q8N684 AL035685.1-201ENST00000636663 812 ntBASIC22.07■■□□□ 1.12
CPSF7Q8N684 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.07■■□□□ 1.12
CPSF7Q8N684 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CPSF7Q8N684 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
CPSF7Q8N684 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.06■■□□□ 1.12
CPSF7Q8N684 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.06■■□□□ 1.12
CPSF7Q8N684 GUSBP5-202ENST00000510805 1989 ntBASIC22.06■■□□□ 1.12
CPSF7Q8N684 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CPSF7Q8N684 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.06■■□□□ 1.12
CPSF7Q8N684 ECEL1P1-201ENST00000373592 1742 ntBASIC22.06■■□□□ 1.12
CPSF7Q8N684 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.05■■□□□ 1.12
CPSF7Q8N684 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.05■■□□□ 1.12
CPSF7Q8N684 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CPSF7Q8N684 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.05■■□□□ 1.12
CPSF7Q8N684 AC127496.7-201ENST00000625110 1798 ntBASIC22.04■■□□□ 1.12
CPSF7Q8N684 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CPSF7Q8N684 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CPSF7Q8N684 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CPSF7Q8N684 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.04■■□□□ 1.12
CPSF7Q8N684 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CPSF7Q8N684 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
CPSF7Q8N684 AC087393.1-201ENST00000582896 145 ntBASIC22.04■■□□□ 1.12
CPSF7Q8N684 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms