Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC31.34■■■□□ 2.61
KRT28Q7Z3Y7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 AL022069.1-201ENST00000568025 1636 ntBASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
KRT28Q7Z3Y7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 TSPY26P-201ENST00000476365 1326 ntBASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 AC004911.1-201ENST00000416316 871 ntBASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
KRT28Q7Z3Y7 NME4-202ENST00000382940 766 ntTSL 3 BASIC31.31■■■□□ 2.6
KRT28Q7Z3Y7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC31.31■■■□□ 2.6
KRT28Q7Z3Y7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.31■■■□□ 2.6
KRT28Q7Z3Y7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
KRT28Q7Z3Y7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
KRT28Q7Z3Y7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC31.3■■■□□ 2.6
KRT28Q7Z3Y7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
KRT28Q7Z3Y7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC31.3■■■□□ 2.6
KRT28Q7Z3Y7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.3■■■□□ 2.6
KRT28Q7Z3Y7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
KRT28Q7Z3Y7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC31.29■■■□□ 2.6
KRT28Q7Z3Y7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC31.29■■■□□ 2.6
KRT28Q7Z3Y7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC31.29■■■□□ 2.6
KRT28Q7Z3Y7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
KRT28Q7Z3Y7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 pRNA.6-201ENST00000610482 90 ntBASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 pRNA.5-201ENST00000612139 90 ntBASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 pRNA.11-201ENST00000618423 90 ntBASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 pRNA.13-201ENST00000619112 90 ntBASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
KRT28Q7Z3Y7 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.26■■■□□ 2.6
KRT28Q7Z3Y7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.6
KRT28Q7Z3Y7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.26■■■□□ 2.6
KRT28Q7Z3Y7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
KRT28Q7Z3Y7 ID1-201ENST00000376105 1233 ntBASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 AC027612.3-201ENST00000413684 1047 ntBASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 AC123595.1-201ENST00000440769 1046 ntBASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.26■■■□□ 2.59
KRT28Q7Z3Y7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.25■■■□□ 2.59
KRT28Q7Z3Y7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
KRT28Q7Z3Y7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 AL358852.1-201ENST00000623174 1268 ntBASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 SLC6A10P-202ENST00000431994 2058 ntBASIC31.23■■■□□ 2.59
KRT28Q7Z3Y7 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
KRT28Q7Z3Y7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
KRT28Q7Z3Y7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
KRT28Q7Z3Y7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC31.22■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms