Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 CLDN5-201ENST00000403084 2357 ntBASIC18.26■□□□□ 0.51
CX3CL1P78423 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CX3CL1P78423 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CL1P78423 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CX3CL1P78423 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.25■□□□□ 0.51
CX3CL1P78423 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.25■□□□□ 0.51
CX3CL1P78423 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.25■□□□□ 0.51
CX3CL1P78423 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CX3CL1P78423 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.25■□□□□ 0.51
CX3CL1P78423 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CL1P78423 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CX3CL1P78423 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.25■□□□□ 0.51
CX3CL1P78423 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CX3CL1P78423 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.24■□□□□ 0.51
CX3CL1P78423 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.24■□□□□ 0.51
CX3CL1P78423 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 AC131274.2-201ENST00000580697 1507 ntBASIC18.24■□□□□ 0.51
CX3CL1P78423 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CX3CL1P78423 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CX3CL1P78423 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 BX664725.1-201ENST00000438252 379 ntBASIC18.24■□□□□ 0.51
CX3CL1P78423 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.24■□□□□ 0.51
CX3CL1P78423 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.24■□□□□ 0.51
CX3CL1P78423 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CL1P78423 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.24■□□□□ 0.51
CX3CL1P78423 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 AL451085.2-201ENST00000605085 799 ntBASIC18.23■□□□□ 0.51
CX3CL1P78423 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CX3CL1P78423 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CX3CL1P78423 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.22■□□□□ 0.51
CX3CL1P78423 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CX3CL1P78423 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CX3CL1P78423 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CX3CL1P78423 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.21■□□□□ 0.51
CX3CL1P78423 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.21■□□□□ 0.51
CX3CL1P78423 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.21■□□□□ 0.51
CX3CL1P78423 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CX3CL1P78423 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.21■□□□□ 0.51
CX3CL1P78423 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.5
CX3CL1P78423 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CX3CL1P78423 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.2■□□□□ 0.5
CX3CL1P78423 AC009299.2-201ENST00000482477 511 ntBASIC18.2■□□□□ 0.5
CX3CL1P78423 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.2■□□□□ 0.5
CX3CL1P78423 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.2■□□□□ 0.5
CX3CL1P78423 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CX3CL1P78423 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.2■□□□□ 0.5
CX3CL1P78423 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.2■□□□□ 0.5
CX3CL1P78423 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.2■□□□□ 0.5
CX3CL1P78423 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CX3CL1P78423 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.19■□□□□ 0.5
CX3CL1P78423 AC021242.3-201ENST00000607598 1377 ntBASIC18.19■□□□□ 0.5
CX3CL1P78423 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CX3CL1P78423 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.19■□□□□ 0.5
CX3CL1P78423 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.19■□□□□ 0.5
CX3CL1P78423 ABCB10P4-201ENST00000566803 2184 ntBASIC18.19■□□□□ 0.5
CX3CL1P78423 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.19■□□□□ 0.5
CX3CL1P78423 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CX3CL1P78423 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CX3CL1P78423 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CX3CL1P78423 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms