Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.68■□□□□ 0.74
ABCA4P78363 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
ABCA4P78363 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 AL022069.1-201ENST00000568025 1636 ntBASIC19.68■□□□□ 0.74
ABCA4P78363 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 AC027682.1-201ENST00000562846 899 ntBASIC19.68■□□□□ 0.74
ABCA4P78363 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ABCA4P78363 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
ABCA4P78363 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.67■□□□□ 0.74
ABCA4P78363 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
ABCA4P78363 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ABCA4P78363 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ABCA4P78363 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ABCA4P78363 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.66■□□□□ 0.74
ABCA4P78363 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.66■□□□□ 0.74
ABCA4P78363 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.66■□□□□ 0.74
ABCA4P78363 IKBKGP1-201ENST00000612193 1073 ntBASIC19.66■□□□□ 0.74
ABCA4P78363 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.66■□□□□ 0.74
ABCA4P78363 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ABCA4P78363 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.65■□□□□ 0.74
ABCA4P78363 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ABCA4P78363 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 AC241377.3-202ENST00000626088 1088 ntBASIC19.65■□□□□ 0.74
ABCA4P78363 AC241585.3-202ENST00000628937 1088 ntBASIC19.65■□□□□ 0.74
ABCA4P78363 AC245100.8-202ENST00000629247 1058 ntBASIC19.65■□□□□ 0.74
ABCA4P78363 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ABCA4P78363 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA4P78363 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.65■□□□□ 0.74
ABCA4P78363 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ABCA4P78363 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.64■□□□□ 0.74
ABCA4P78363 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.64■□□□□ 0.74
ABCA4P78363 AC022517.1-201ENST00000592429 346 ntBASIC19.64■□□□□ 0.74
ABCA4P78363 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ABCA4P78363 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ABCA4P78363 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ABCA4P78363 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.64■□□□□ 0.73
ABCA4P78363 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.64■□□□□ 0.73
ABCA4P78363 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.63■□□□□ 0.73
ABCA4P78363 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ABCA4P78363 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA4P78363 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA4P78363 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA4P78363 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ABCA4P78363 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ABCA4P78363 AC099791.1-201ENST00000416440 715 ntBASIC19.63■□□□□ 0.73
ABCA4P78363 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ABCA4P78363 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA4P78363 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
ABCA4P78363 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ABCA4P78363 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.62■□□□□ 0.73
ABCA4P78363 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.62■□□□□ 0.73
ABCA4P78363 AC233992.3-201ENST00000607491 485 ntBASIC19.62■□□□□ 0.73
ABCA4P78363 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.62■□□□□ 0.73
ABCA4P78363 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
ABCA4P78363 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 ID1-201ENST00000376105 1233 ntBASIC19.62■□□□□ 0.73
ABCA4P78363 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.62■□□□□ 0.73
ABCA4P78363 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.62■□□□□ 0.73
ABCA4P78363 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA4P78363 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.62■□□□□ 0.73
ABCA4P78363 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ABCA4P78363 AC135731.1-201ENST00000569415 2548 ntBASIC19.61■□□□□ 0.73
ABCA4P78363 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ABCA4P78363 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
ABCA4P78363 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ABCA4P78363 BX842568.3-201ENST00000418104 571 ntBASIC19.61■□□□□ 0.73
ABCA4P78363 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.61■□□□□ 0.73
ABCA4P78363 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.61■□□□□ 0.73
ABCA4P78363 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.61■□□□□ 0.73
ABCA4P78363 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ABCA4P78363 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ABCA4P78363 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.6■□□□□ 0.73
ABCA4P78363 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
ABCA4P78363 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.6■□□□□ 0.73
ABCA4P78363 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA4P78363 AC092171.4-201ENST00000609130 632 ntBASIC19.6■□□□□ 0.73
ABCA4P78363 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms