Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LSM1O15116 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
LSM1O15116 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.95■■□□□ 1.1
LSM1O15116 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.95■■□□□ 1.1
LSM1O15116 ABHD17AP5-201ENST00000580133 923 ntBASIC21.95■■□□□ 1.1
LSM1O15116 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LSM1O15116 AC131274.2-201ENST00000580697 1507 ntBASIC21.95■■□□□ 1.1
LSM1O15116 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.95■■□□□ 1.1
LSM1O15116 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LSM1O15116 AC022616.5-201ENST00000518796 181 ntBASIC21.94■■□□□ 1.1
LSM1O15116 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
LSM1O15116 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LSM1O15116 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.94■■□□□ 1.1
LSM1O15116 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LSM1O15116 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
LSM1O15116 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LSM1O15116 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
LSM1O15116 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
LSM1O15116 DUX4L18-201ENST00000553347 1267 ntBASIC21.93■■□□□ 1.1
LSM1O15116 NTF6A-201ENST00000591175 560 ntBASIC21.93■■□□□ 1.1
LSM1O15116 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
LSM1O15116 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.93■■□□□ 1.1
LSM1O15116 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LSM1O15116 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.92■■□□□ 1.1
LSM1O15116 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.92■■□□□ 1.1
LSM1O15116 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
LSM1O15116 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.92■■□□□ 1.1
LSM1O15116 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LSM1O15116 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.92■■□□□ 1.1
LSM1O15116 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
LSM1O15116 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
LSM1O15116 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.91■■□□□ 1.1
LSM1O15116 AC139795.1-202ENST00000500444 432 ntBASIC21.91■■□□□ 1.1
LSM1O15116 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.91■■□□□ 1.1
LSM1O15116 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.91■■□□□ 1.1
LSM1O15116 DUSP8P3-201ENST00000399571 1760 ntBASIC21.91■■□□□ 1.1
LSM1O15116 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LSM1O15116 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
LSM1O15116 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LSM1O15116 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.9■■□□□ 1.1
LSM1O15116 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
LSM1O15116 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.9■■□□□ 1.1
LSM1O15116 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LSM1O15116 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
LSM1O15116 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LSM1O15116 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.9■■□□□ 1.1
LSM1O15116 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LSM1O15116 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
LSM1O15116 ALDH1A3-203ENST00000557963 1670 ntBASIC21.88■■□□□ 1.09
LSM1O15116 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.88■■□□□ 1.09
LSM1O15116 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
LSM1O15116 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LSM1O15116 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LSM1O15116 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
LSM1O15116 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.87■■□□□ 1.09
LSM1O15116 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.87■■□□□ 1.09
LSM1O15116 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
LSM1O15116 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
LSM1O15116 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
LSM1O15116 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.87■■□□□ 1.09
LSM1O15116 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
LSM1O15116 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LSM1O15116 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LSM1O15116 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
LSM1O15116 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
LSM1O15116 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
LSM1O15116 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LSM1O15116 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
LSM1O15116 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
LSM1O15116 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
LSM1O15116 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LSM1O15116 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.86■■□□□ 1.09
LSM1O15116 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
LSM1O15116 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LSM1O15116 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.86■■□□□ 1.09
LSM1O15116 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.86■■□□□ 1.09
LSM1O15116 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
LSM1O15116 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.85■■□□□ 1.09
LSM1O15116 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
LSM1O15116 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms