Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
FOXN3O00409 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
FOXN3O00409 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
FOXN3O00409 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
FOXN3O00409 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC24.45■■□□□ 1.51
FOXN3O00409 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 AC004448.1-201ENST00000458332 883 ntBASIC24.45■■□□□ 1.5
FOXN3O00409 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.45■■□□□ 1.5
FOXN3O00409 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.45■■□□□ 1.5
FOXN3O00409 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
FOXN3O00409 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.44■■□□□ 1.5
FOXN3O00409 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.44■■□□□ 1.5
FOXN3O00409 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.44■■□□□ 1.5
FOXN3O00409 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
FOXN3O00409 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.43■■□□□ 1.5
FOXN3O00409 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
FOXN3O00409 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
FOXN3O00409 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.43■■□□□ 1.5
FOXN3O00409 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.43■■□□□ 1.5
FOXN3O00409 AC137630.3-201ENST00000607245 391 ntBASIC24.43■■□□□ 1.5
FOXN3O00409 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.43■■□□□ 1.5
FOXN3O00409 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.43■■□□□ 1.5
FOXN3O00409 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
FOXN3O00409 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.42■■□□□ 1.5
FOXN3O00409 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
FOXN3O00409 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.42■■□□□ 1.5
FOXN3O00409 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
FOXN3O00409 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXN3O00409 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXN3O00409 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
FOXN3O00409 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXN3O00409 ANOS2P-203ENST00000472227 1816 ntBASIC24.42■■□□□ 1.5
FOXN3O00409 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.42■■□□□ 1.5
FOXN3O00409 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXN3O00409 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXN3O00409 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
FOXN3O00409 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
FOXN3O00409 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
FOXN3O00409 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
FOXN3O00409 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
FOXN3O00409 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.4■■□□□ 1.5
FOXN3O00409 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.4■■□□□ 1.5
FOXN3O00409 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.4■■□□□ 1.5
FOXN3O00409 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
FOXN3O00409 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
FOXN3O00409 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
FOXN3O00409 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
FOXN3O00409 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
FOXN3O00409 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
FOXN3O00409 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
FOXN3O00409 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
FOXN3O00409 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
FOXN3O00409 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.38■■□□□ 1.49
FOXN3O00409 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.38■■□□□ 1.49
FOXN3O00409 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.38■■□□□ 1.49
FOXN3O00409 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.38■■□□□ 1.49
FOXN3O00409 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
FOXN3O00409 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
FOXN3O00409 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.38■■□□□ 1.49
FOXN3O00409 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.38■■□□□ 1.49
FOXN3O00409 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
FOXN3O00409 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
FOXN3O00409 C9orf163-202ENST00000624034 2573 ntBASIC24.38■■□□□ 1.49
FOXN3O00409 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.37■■□□□ 1.49
FOXN3O00409 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.37■■□□□ 1.49
FOXN3O00409 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
FOXN3O00409 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
FOXN3O00409 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.37■■□□□ 1.49
FOXN3O00409 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.37■■□□□ 1.49
FOXN3O00409 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.37■■□□□ 1.49
FOXN3O00409 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.37■■□□□ 1.49
FOXN3O00409 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
FOXN3O00409 AC133561.1-201ENST00000568600 2415 ntBASIC24.36■■□□□ 1.49
FOXN3O00409 RARRES2P1-201ENST00000474487 481 ntBASIC24.36■■□□□ 1.49
FOXN3O00409 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
FOXN3O00409 SNX5-217ENST00000606557 1087 ntBASIC24.36■■□□□ 1.49
FOXN3O00409 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
FOXN3O00409 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC24.36■■□□□ 1.49
FOXN3O00409 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.35■■□□□ 1.49
FOXN3O00409 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.35■■□□□ 1.49
FOXN3O00409 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
FOXN3O00409 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.35■■□□□ 1.49
FOXN3O00409 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
FOXN3O00409 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
FOXN3O00409 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.35■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms