Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ABCA4P78363 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
ABCA4P78363 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.77■□□□□ 0.75
ABCA4P78363 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.77■□□□□ 0.75
ABCA4P78363 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
ABCA4P78363 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.77■□□□□ 0.75
ABCA4P78363 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.77■□□□□ 0.75
ABCA4P78363 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
ABCA4P78363 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.76■□□□□ 0.75
ABCA4P78363 CA15P2-201ENST00000611168 834 ntBASIC19.76■□□□□ 0.75
ABCA4P78363 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
ABCA4P78363 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.76■□□□□ 0.75
ABCA4P78363 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.76■□□□□ 0.75
ABCA4P78363 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ABCA4P78363 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.76■□□□□ 0.75
ABCA4P78363 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.76■□□□□ 0.75
ABCA4P78363 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ABCA4P78363 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ABCA4P78363 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ABCA4P78363 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ABCA4P78363 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ABCA4P78363 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 RARRES2P11-201ENST00000635158 484 ntBASIC19.74■□□□□ 0.75
ABCA4P78363 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ABCA4P78363 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ABCA4P78363 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ABCA4P78363 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ABCA4P78363 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.74■□□□□ 0.75
ABCA4P78363 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.74■□□□□ 0.75
ABCA4P78363 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ABCA4P78363 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.74■□□□□ 0.75
ABCA4P78363 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ABCA4P78363 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
ABCA4P78363 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.73■□□□□ 0.75
ABCA4P78363 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ABCA4P78363 AC008764.7-201ENST00000593779 1081 ntBASIC19.73■□□□□ 0.75
ABCA4P78363 AC099791.2-201ENST00000605725 427 ntBASIC19.73■□□□□ 0.75
ABCA4P78363 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.73■□□□□ 0.75
ABCA4P78363 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.73■□□□□ 0.75
ABCA4P78363 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ABCA4P78363 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.73■□□□□ 0.75
ABCA4P78363 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ABCA4P78363 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.73■□□□□ 0.75
ABCA4P78363 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ABCA4P78363 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.73■□□□□ 0.75
ABCA4P78363 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.72■□□□□ 0.75
ABCA4P78363 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.72■□□□□ 0.75
ABCA4P78363 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ABCA4P78363 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA4P78363 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ABCA4P78363 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.71■□□□□ 0.75
ABCA4P78363 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 IRS3P-201ENST00000223076 1006 ntBASIC19.71■□□□□ 0.75
ABCA4P78363 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.71■□□□□ 0.75
ABCA4P78363 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ABCA4P78363 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 AC006455.2-201ENST00000429931 906 ntBASIC19.71■□□□□ 0.75
ABCA4P78363 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ABCA4P78363 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA4P78363 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA4P78363 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA4P78363 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA4P78363 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA4P78363 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.7■□□□□ 0.74
ABCA4P78363 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.7■□□□□ 0.74
ABCA4P78363 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
ABCA4P78363 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ABCA4P78363 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA4P78363 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA4P78363 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.69■□□□□ 0.74
ABCA4P78363 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ABCA4P78363 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ABCA4P78363 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
ABCA4P78363 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.69■□□□□ 0.74
ABCA4P78363 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.69■□□□□ 0.74
ABCA4P78363 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms