Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRAV40A0A0B4J280 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TRAV40A0A0B4J280 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV40A0A0B4J280 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRAV40A0A0B4J280 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAV40A0A0B4J280 HLA-L-211ENST00000482052 1765 ntBASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAV40A0A0B4J280 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV40A0A0B4J280 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV40A0A0B4J280 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRAV40A0A0B4J280 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
TRAV40A0A0B4J280 AC022211.4-201ENST00000625094 2161 ntBASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 PBX2P1-201ENST00000493219 1291 ntBASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV40A0A0B4J280 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 UNC93B3-201ENST00000308076 687 ntBASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 AL136162.1-201ENST00000607711 1078 ntBASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAV40A0A0B4J280 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 MIR935-201ENST00000401179 91 ntBASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 AC005837.3-201ENST00000612163 286 ntBASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 AC106739.1-201ENST00000617035 715 ntBASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV40A0A0B4J280 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.59■□□□□ 0.57
TRAV40A0A0B4J280 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV40A0A0B4J280 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.58■□□□□ 0.57
TRAV40A0A0B4J280 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAV40A0A0B4J280 AC135279.3-201ENST00000610945 1311 ntBASIC18.58■□□□□ 0.57
TRAV40A0A0B4J280 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
TRAV40A0A0B4J280 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms