Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 AC024257.2-201ENST00000549699 147 ntBASIC27.41■■□□□ 1.98
DDX4Q9NQI0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.41■■□□□ 1.98
DDX4Q9NQI0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
DDX4Q9NQI0 AC135279.3-201ENST00000610945 1311 ntBASIC27.4■■□□□ 1.98
DDX4Q9NQI0 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
DDX4Q9NQI0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 ZNRF2P3-201ENST00000424200 374 ntBASIC27.38■■□□□ 1.97
DDX4Q9NQI0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 SUDS3P1-201ENST00000505831 966 ntBASIC27.38■■□□□ 1.97
DDX4Q9NQI0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
DDX4Q9NQI0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
DDX4Q9NQI0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 AL022069.1-201ENST00000568025 1636 ntBASIC27.36■■□□□ 1.97
DDX4Q9NQI0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
DDX4Q9NQI0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 AC142381.2-201ENST00000566120 298 ntBASIC27.35■■□□□ 1.97
DDX4Q9NQI0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
DDX4Q9NQI0 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
DDX4Q9NQI0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX4Q9NQI0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX4Q9NQI0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
DDX4Q9NQI0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC27.33■■□□□ 1.97
DDX4Q9NQI0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC27.33■■□□□ 1.97
DDX4Q9NQI0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.33■■□□□ 1.96
DDX4Q9NQI0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 HLA-L-211ENST00000482052 1765 ntBASIC27.32■■□□□ 1.96
DDX4Q9NQI0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 AC009102.2-201ENST00000606772 1639 ntBASIC27.32■■□□□ 1.96
DDX4Q9NQI0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
DDX4Q9NQI0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
DDX4Q9NQI0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms