Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LINC00526-201ENST00000581067 1875 ntBASIC20.15■□□□□ 0.82
MMP28Q9H239 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MMP28Q9H239 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.15■□□□□ 0.82
MMP28Q9H239 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.14■□□□□ 0.81
MMP28Q9H239 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MMP28Q9H239 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MMP28Q9H239 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.14■□□□□ 0.81
MMP28Q9H239 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MMP28Q9H239 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.14■□□□□ 0.81
MMP28Q9H239 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
MMP28Q9H239 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.13■□□□□ 0.81
MMP28Q9H239 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.12■□□□□ 0.81
MMP28Q9H239 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
MMP28Q9H239 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.12■□□□□ 0.81
MMP28Q9H239 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.12■□□□□ 0.81
MMP28Q9H239 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
MMP28Q9H239 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MMP28Q9H239 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP28Q9H239 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
MMP28Q9H239 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP28Q9H239 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MMP28Q9H239 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.11■□□□□ 0.81
MMP28Q9H239 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP28Q9H239 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MMP28Q9H239 AL137060.1-201ENST00000618151 2648 ntBASIC20.11■□□□□ 0.81
MMP28Q9H239 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MMP28Q9H239 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
MMP28Q9H239 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP28Q9H239 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
MMP28Q9H239 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP28Q9H239 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP28Q9H239 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
MMP28Q9H239 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
MMP28Q9H239 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
MMP28Q9H239 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.1■□□□□ 0.81
MMP28Q9H239 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MMP28Q9H239 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MMP28Q9H239 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
MMP28Q9H239 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
MMP28Q9H239 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
MMP28Q9H239 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.09■□□□□ 0.81
MMP28Q9H239 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.09■□□□□ 0.81
MMP28Q9H239 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MMP28Q9H239 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
MMP28Q9H239 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
MMP28Q9H239 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MMP28Q9H239 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.08■□□□□ 0.81
MMP28Q9H239 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MMP28Q9H239 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
MMP28Q9H239 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MMP28Q9H239 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MMP28Q9H239 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP28Q9H239 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP28Q9H239 AC127496.7-201ENST00000625110 1798 ntBASIC20.07■□□□□ 0.8
MMP28Q9H239 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP28Q9H239 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP28Q9H239 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MMP28Q9H239 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
MMP28Q9H239 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
MMP28Q9H239 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MMP28Q9H239 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP28Q9H239 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
MMP28Q9H239 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms