Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 ECEL1P2-201ENST00000461596 1295 ntBASIC20.72■□□□□ 0.91
ZNF404Q494X3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.72■□□□□ 0.91
ZNF404Q494X3 C1orf229-201ENST00000623686 2258 ntBASIC20.72■□□□□ 0.91
ZNF404Q494X3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.72■□□□□ 0.91
ZNF404Q494X3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
ZNF404Q494X3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF404Q494X3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF404Q494X3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF404Q494X3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.71■□□□□ 0.91
ZNF404Q494X3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF404Q494X3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF404Q494X3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF404Q494X3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF404Q494X3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF404Q494X3 LINC00526-201ENST00000581067 1875 ntBASIC20.7■□□□□ 0.9
ZNF404Q494X3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF404Q494X3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF404Q494X3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.7■□□□□ 0.9
ZNF404Q494X3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 AC127496.7-201ENST00000625110 1798 ntBASIC20.69■□□□□ 0.9
ZNF404Q494X3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
ZNF404Q494X3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF404Q494X3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF404Q494X3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF404Q494X3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
ZNF404Q494X3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF404Q494X3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF404Q494X3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
ZNF404Q494X3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ZNF404Q494X3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF404Q494X3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.68■□□□□ 0.9
ZNF404Q494X3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF404Q494X3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF404Q494X3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF404Q494X3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF404Q494X3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF404Q494X3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF404Q494X3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
ZNF404Q494X3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNF404Q494X3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ZNF404Q494X3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF404Q494X3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF404Q494X3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF404Q494X3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF404Q494X3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF404Q494X3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.65■□□□□ 0.9
ZNF404Q494X3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
ZNF404Q494X3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
ZNF404Q494X3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
ZNF404Q494X3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.65■□□□□ 0.9
ZNF404Q494X3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
ZNF404Q494X3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
ZNF404Q494X3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF404Q494X3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ZNF404Q494X3 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.64■□□□□ 0.89
ZNF404Q494X3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ZNF404Q494X3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.64■□□□□ 0.89
ZNF404Q494X3 AC007375.3-201ENST00000600936 2314 ntBASIC20.64■□□□□ 0.89
ZNF404Q494X3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF404Q494X3 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.63■□□□□ 0.89
ZNF404Q494X3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.63■□□□□ 0.89
ZNF404Q494X3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF404Q494X3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF404Q494X3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.63■□□□□ 0.89
ZNF404Q494X3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF404Q494X3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF404Q494X3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF404Q494X3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF404Q494X3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF404Q494X3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ZNF404Q494X3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 ABHD17AP5-201ENST00000580133 923 ntBASIC20.62■□□□□ 0.89
ZNF404Q494X3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ZNF404Q494X3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms