Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFC3P40938 MIR6722-201ENST00000617286 78 ntBASIC21.03■□□□□ 0.96
RFC3P40938 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFC3P40938 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.02■□□□□ 0.96
RFC3P40938 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.02■□□□□ 0.96
RFC3P40938 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFC3P40938 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFC3P40938 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFC3P40938 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
RFC3P40938 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.02■□□□□ 0.96
RFC3P40938 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFC3P40938 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFC3P40938 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RFC3P40938 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
RFC3P40938 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.01■□□□□ 0.95
RFC3P40938 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 AC004448.1-201ENST00000458332 883 ntBASIC21.01■□□□□ 0.95
RFC3P40938 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.01■□□□□ 0.95
RFC3P40938 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.01■□□□□ 0.95
RFC3P40938 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFC3P40938 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RFC3P40938 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFC3P40938 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFC3P40938 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFC3P40938 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21■□□□□ 0.95
RFC3P40938 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21■□□□□ 0.95
RFC3P40938 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RFC3P40938 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21■□□□□ 0.95
RFC3P40938 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21■□□□□ 0.95
RFC3P40938 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21■□□□□ 0.95
RFC3P40938 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC3P40938 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC3P40938 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.99■□□□□ 0.95
RFC3P40938 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC3P40938 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 MIR6089-201ENST00000616698 64 ntBASIC20.99■□□□□ 0.95
RFC3P40938 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC3P40938 AC131274.2-201ENST00000580697 1507 ntBASIC20.99■□□□□ 0.95
RFC3P40938 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
RFC3P40938 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
RFC3P40938 AC096631.2-201ENST00000436136 790 ntBASIC20.98■□□□□ 0.95
RFC3P40938 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.98■□□□□ 0.95
RFC3P40938 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
RFC3P40938 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC3P40938 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC3P40938 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC3P40938 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RFC3P40938 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC3P40938 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RFC3P40938 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC3P40938 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC3P40938 AL139246.5-201ENST00000606645 996 ntBASIC20.96■□□□□ 0.95
RFC3P40938 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC3P40938 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC3P40938 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC3P40938 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
RFC3P40938 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC3P40938 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC3P40938 MIR638-201ENST00000385237 100 ntBASIC20.95■□□□□ 0.94
RFC3P40938 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.95■□□□□ 0.94
RFC3P40938 AC110285.6-201ENST00000617652 491 ntBASIC20.95■□□□□ 0.94
RFC3P40938 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC3P40938 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RFC3P40938 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.95■□□□□ 0.94
RFC3P40938 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC3P40938 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC3P40938 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC3P40938 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC3P40938 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RFC3P40938 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC3P40938 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC3P40938 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms