Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.67■■□□□ 1.22
VRK3Q8IV63 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
VRK3Q8IV63 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.67■■□□□ 1.22
VRK3Q8IV63 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.67■■□□□ 1.22
VRK3Q8IV63 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
VRK3Q8IV63 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
VRK3Q8IV63 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
VRK3Q8IV63 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
VRK3Q8IV63 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.66■■□□□ 1.22
VRK3Q8IV63 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
VRK3Q8IV63 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
VRK3Q8IV63 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
VRK3Q8IV63 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
VRK3Q8IV63 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.65■■□□□ 1.22
VRK3Q8IV63 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VRK3Q8IV63 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VRK3Q8IV63 AC009299.2-201ENST00000482477 511 ntBASIC22.65■■□□□ 1.22
VRK3Q8IV63 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.65■■□□□ 1.22
VRK3Q8IV63 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.65■■□□□ 1.22
VRK3Q8IV63 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
VRK3Q8IV63 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VRK3Q8IV63 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
VRK3Q8IV63 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
VRK3Q8IV63 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
VRK3Q8IV63 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
VRK3Q8IV63 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VRK3Q8IV63 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
VRK3Q8IV63 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
VRK3Q8IV63 AC137630.3-201ENST00000607245 391 ntBASIC22.64■■□□□ 1.21
VRK3Q8IV63 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VRK3Q8IV63 AC004812.2-201ENST00000611079 2094 ntBASIC22.64■■□□□ 1.21
VRK3Q8IV63 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VRK3Q8IV63 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
VRK3Q8IV63 AC131274.2-201ENST00000580697 1507 ntBASIC22.63■■□□□ 1.21
VRK3Q8IV63 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VRK3Q8IV63 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
VRK3Q8IV63 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.63■■□□□ 1.21
VRK3Q8IV63 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.63■■□□□ 1.21
VRK3Q8IV63 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VRK3Q8IV63 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.63■■□□□ 1.21
VRK3Q8IV63 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
VRK3Q8IV63 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VRK3Q8IV63 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.62■■□□□ 1.21
VRK3Q8IV63 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.62■■□□□ 1.21
VRK3Q8IV63 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.62■■□□□ 1.21
VRK3Q8IV63 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
VRK3Q8IV63 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.62■■□□□ 1.21
VRK3Q8IV63 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VRK3Q8IV63 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VRK3Q8IV63 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VRK3Q8IV63 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.61■■□□□ 1.21
VRK3Q8IV63 AC141586.4-201ENST00000624558 1573 ntBASIC22.61■■□□□ 1.21
VRK3Q8IV63 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VRK3Q8IV63 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VRK3Q8IV63 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VRK3Q8IV63 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VRK3Q8IV63 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VRK3Q8IV63 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
VRK3Q8IV63 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
VRK3Q8IV63 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.6■■□□□ 1.21
VRK3Q8IV63 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VRK3Q8IV63 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
VRK3Q8IV63 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
VRK3Q8IV63 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VRK3Q8IV63 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VRK3Q8IV63 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.59■■□□□ 1.21
VRK3Q8IV63 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.59■■□□□ 1.21
VRK3Q8IV63 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VRK3Q8IV63 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
VRK3Q8IV63 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
VRK3Q8IV63 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VRK3Q8IV63 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VRK3Q8IV63 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
VRK3Q8IV63 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
VRK3Q8IV63 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
VRK3Q8IV63 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
VRK3Q8IV63 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VRK3Q8IV63 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
VRK3Q8IV63 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
VRK3Q8IV63 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 AC021242.3-201ENST00000607598 1377 ntBASIC22.57■■□□□ 1.2
VRK3Q8IV63 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VRK3Q8IV63 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
VRK3Q8IV63 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VRK3Q8IV63 BX664725.1-201ENST00000438252 379 ntBASIC22.56■■□□□ 1.2
VRK3Q8IV63 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms