Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.26■■□□□ 1.15
LSM1O15116 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.26■■□□□ 1.15
LSM1O15116 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LSM1O15116 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.26■■□□□ 1.15
LSM1O15116 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.25■■□□□ 1.15
LSM1O15116 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.25■■□□□ 1.15
LSM1O15116 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
LSM1O15116 AC087393.1-201ENST00000582896 145 ntBASIC22.25■■□□□ 1.15
LSM1O15116 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
LSM1O15116 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LSM1O15116 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
LSM1O15116 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
LSM1O15116 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
LSM1O15116 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LSM1O15116 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
LSM1O15116 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
LSM1O15116 AC090877.2-201ENST00000558441 1738 ntBASIC22.23■■□□□ 1.15
LSM1O15116 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LSM1O15116 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
LSM1O15116 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
LSM1O15116 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LSM1O15116 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.23■■□□□ 1.15
LSM1O15116 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.23■■□□□ 1.15
LSM1O15116 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
LSM1O15116 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.23■■□□□ 1.15
LSM1O15116 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LSM1O15116 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.23■■□□□ 1.15
LSM1O15116 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
LSM1O15116 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.22■■□□□ 1.15
LSM1O15116 DUX4L9-201ENST00000449051 1259 ntBASIC22.22■■□□□ 1.15
LSM1O15116 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
LSM1O15116 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
LSM1O15116 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
LSM1O15116 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LSM1O15116 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.21■■□□□ 1.15
LSM1O15116 AC068473.5-201ENST00000616428 2072 ntBASIC22.21■■□□□ 1.15
LSM1O15116 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.21■■□□□ 1.15
LSM1O15116 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
LSM1O15116 MIR6765-201ENST00000614092 87 ntBASIC22.21■■□□□ 1.15
LSM1O15116 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LSM1O15116 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
LSM1O15116 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
LSM1O15116 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
LSM1O15116 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LSM1O15116 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LSM1O15116 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
LSM1O15116 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.2■■□□□ 1.14
LSM1O15116 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.2■■□□□ 1.14
LSM1O15116 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 RARRES2P2-201ENST00000394842 485 ntBASIC22.2■■□□□ 1.14
LSM1O15116 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.2■■□□□ 1.14
LSM1O15116 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LSM1O15116 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 AL592295.1-201ENST00000400984 884 ntBASIC22.19■■□□□ 1.14
LSM1O15116 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.19■■□□□ 1.14
LSM1O15116 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.19■■□□□ 1.14
LSM1O15116 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.19■■□□□ 1.14
LSM1O15116 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 AC012676.1-201ENST00000574705 1949 ntBASIC22.19■■□□□ 1.14
LSM1O15116 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LSM1O15116 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
LSM1O15116 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.18■■□□□ 1.14
LSM1O15116 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LSM1O15116 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LSM1O15116 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.17■■□□□ 1.14
LSM1O15116 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.17■■□□□ 1.14
LSM1O15116 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.17■■□□□ 1.14
LSM1O15116 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LSM1O15116 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LSM1O15116 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LSM1O15116 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
LSM1O15116 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms