Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
LMX1BO60663 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.37■□□□□ 0.85
LMX1BO60663 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.37■□□□□ 0.85
LMX1BO60663 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.37■□□□□ 0.85
LMX1BO60663 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 AC004812.2-201ENST00000611079 2094 ntBASIC20.37■□□□□ 0.85
LMX1BO60663 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1BO60663 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.36■□□□□ 0.85
LMX1BO60663 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.36■□□□□ 0.85
LMX1BO60663 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1BO60663 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.36■□□□□ 0.85
LMX1BO60663 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1BO60663 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1BO60663 MIR6089-201ENST00000616698 64 ntBASIC20.36■□□□□ 0.85
LMX1BO60663 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1BO60663 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LMX1BO60663 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
LMX1BO60663 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.35■□□□□ 0.85
LMX1BO60663 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LMX1BO60663 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.35■□□□□ 0.85
LMX1BO60663 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
LMX1BO60663 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1BO60663 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1BO60663 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1BO60663 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1BO60663 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LMX1BO60663 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1BO60663 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.34■□□□□ 0.85
LMX1BO60663 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1BO60663 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LMX1BO60663 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.33■□□□□ 0.85
LMX1BO60663 AC103834.1-201ENST00000520383 144 ntBASIC20.33■□□□□ 0.85
LMX1BO60663 AC131212.1-201ENST00000613771 668 ntBASIC20.33■□□□□ 0.85
LMX1BO60663 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.32■□□□□ 0.84
LMX1BO60663 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.32■□□□□ 0.84
LMX1BO60663 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.32■□□□□ 0.84
LMX1BO60663 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 AC141586.4-201ENST00000624558 1573 ntBASIC20.32■□□□□ 0.84
LMX1BO60663 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.32■□□□□ 0.84
LMX1BO60663 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LMX1BO60663 ABCB10P4-201ENST00000566803 2184 ntBASIC20.31■□□□□ 0.84
LMX1BO60663 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LMX1BO60663 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1BO60663 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.31■□□□□ 0.84
LMX1BO60663 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1BO60663 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LMX1BO60663 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LMX1BO60663 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.31■□□□□ 0.84
LMX1BO60663 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.3■□□□□ 0.84
LMX1BO60663 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1BO60663 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1BO60663 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.3■□□□□ 0.84
LMX1BO60663 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.3■□□□□ 0.84
LMX1BO60663 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1BO60663 HLA-L-211ENST00000482052 1765 ntBASIC20.3■□□□□ 0.84
LMX1BO60663 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LMX1BO60663 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.29■□□□□ 0.84
LMX1BO60663 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1BO60663 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1BO60663 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.29■□□□□ 0.84
LMX1BO60663 MIR4508-201ENST00000584178 70 ntBASIC20.29■□□□□ 0.84
LMX1BO60663 PVT1_1.1-201ENST00000615125 194 ntBASIC20.29■□□□□ 0.84
LMX1BO60663 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1BO60663 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LMX1BO60663 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.28■□□□□ 0.84
LMX1BO60663 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
LMX1BO60663 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
LMX1BO60663 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LMX1BO60663 FOXO3B-201ENST00000395675 1928 ntBASIC20.27■□□□□ 0.84
LMX1BO60663 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms