Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 MTDHP2-201ENST00000601468 714 ntBASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMCHD1A6NHR9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
SMCHD1A6NHR9 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.82■■□□□ 1.88
SMCHD1A6NHR9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.81■■□□□ 1.88
SMCHD1A6NHR9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SMCHD1A6NHR9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.8■■□□□ 1.88
SMCHD1A6NHR9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SMCHD1A6NHR9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
SMCHD1A6NHR9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SMCHD1A6NHR9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
SMCHD1A6NHR9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SMCHD1A6NHR9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
SMCHD1A6NHR9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SMCHD1A6NHR9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.78■■□□□ 1.88
SMCHD1A6NHR9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SMCHD1A6NHR9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SMCHD1A6NHR9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.77■■□□□ 1.88
SMCHD1A6NHR9 AC145676.1-201ENST00000514988 2004 ntBASIC26.77■■□□□ 1.88
SMCHD1A6NHR9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.77■■□□□ 1.88
SMCHD1A6NHR9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SMCHD1A6NHR9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.76■■□□□ 1.88
SMCHD1A6NHR9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
SMCHD1A6NHR9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.76■■□□□ 1.87
SMCHD1A6NHR9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.76■■□□□ 1.87
SMCHD1A6NHR9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.76■■□□□ 1.87
SMCHD1A6NHR9 AL356740.2-201ENST00000601559 647 ntBASIC26.76■■□□□ 1.87
SMCHD1A6NHR9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SMCHD1A6NHR9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.75■■□□□ 1.87
SMCHD1A6NHR9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 AC096631.2-201ENST00000436136 790 ntBASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMCHD1A6NHR9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 AC131274.2-201ENST00000580697 1507 ntBASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.73■■□□□ 1.87
SMCHD1A6NHR9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.72■■□□□ 1.87
SMCHD1A6NHR9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 SUDS3P1-201ENST00000505831 966 ntBASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SMCHD1A6NHR9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.7■■□□□ 1.87
SMCHD1A6NHR9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SMCHD1A6NHR9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
SMCHD1A6NHR9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SMCHD1A6NHR9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SMCHD1A6NHR9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
SMCHD1A6NHR9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms