Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHANK1Q9Y566 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.25■□□□□ 0.99
SHANK1Q9Y566 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.24■□□□□ 0.99
SHANK1Q9Y566 UNC93B3-201ENST00000308076 687 ntBASIC21.23■□□□□ 0.99
SHANK1Q9Y566 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 AC024257.2-201ENST00000549699 147 ntBASIC21.23■□□□□ 0.99
SHANK1Q9Y566 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.23■□□□□ 0.99
SHANK1Q9Y566 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 EDA-201ENST00000338901 1233 ntBASIC21.22■□□□□ 0.99
SHANK1Q9Y566 AC105265.2-201ENST00000467189 838 ntBASIC21.22■□□□□ 0.99
SHANK1Q9Y566 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK1Q9Y566 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SHANK1Q9Y566 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 AF213884.3-201ENST00000563833 479 ntBASIC21.2■□□□□ 0.98
SHANK1Q9Y566 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK1Q9Y566 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK1Q9Y566 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.19■□□□□ 0.98
SHANK1Q9Y566 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SHANK1Q9Y566 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK1Q9Y566 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK1Q9Y566 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.17■□□□□ 0.98
SHANK1Q9Y566 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.17■□□□□ 0.98
SHANK1Q9Y566 AL136162.1-201ENST00000607711 1078 ntBASIC21.17■□□□□ 0.98
SHANK1Q9Y566 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK1Q9Y566 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK1Q9Y566 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.17■□□□□ 0.98
SHANK1Q9Y566 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 AC087623.3-201ENST00000607047 1098 ntBASIC21.16■□□□□ 0.98
SHANK1Q9Y566 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SHANK1Q9Y566 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 AP001330.3-201ENST00000520123 633 ntBASIC21.15■□□□□ 0.98
SHANK1Q9Y566 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK1Q9Y566 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.14■□□□□ 0.98
SHANK1Q9Y566 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.14■□□□□ 0.98
SHANK1Q9Y566 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHANK1Q9Y566 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.14■□□□□ 0.98
SHANK1Q9Y566 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.14■□□□□ 0.97
SHANK1Q9Y566 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHANK1Q9Y566 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.14■□□□□ 0.97
SHANK1Q9Y566 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.14■□□□□ 0.97
SHANK1Q9Y566 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms