Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
SMC4Q9NTJ3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC30.03■■■□□ 2.4
SMC4Q9NTJ3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SMC4Q9NTJ3 AC090877.2-201ENST00000558441 1738 ntBASIC30.02■■■□□ 2.4
SMC4Q9NTJ3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.02■■■□□ 2.4
SMC4Q9NTJ3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.02■■■□□ 2.4
SMC4Q9NTJ3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SMC4Q9NTJ3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SMC4Q9NTJ3 AC022616.5-201ENST00000518796 181 ntBASIC30.01■■■□□ 2.39
SMC4Q9NTJ3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMC4Q9NTJ3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.01■■■□□ 2.39
SMC4Q9NTJ3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMC4Q9NTJ3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMC4Q9NTJ3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SMC4Q9NTJ3 KRT8P33-201ENST00000508125 1423 ntBASIC30■■■□□ 2.39
SMC4Q9NTJ3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30■■■□□ 2.39
SMC4Q9NTJ3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30■■■□□ 2.39
SMC4Q9NTJ3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30■■■□□ 2.39
SMC4Q9NTJ3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC30■■■□□ 2.39
SMC4Q9NTJ3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30■■■□□ 2.39
SMC4Q9NTJ3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SMC4Q9NTJ3 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.99■■■□□ 2.39
SMC4Q9NTJ3 AC103834.1-201ENST00000520383 144 ntBASIC29.99■■■□□ 2.39
SMC4Q9NTJ3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SMC4Q9NTJ3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMC4Q9NTJ3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.98■■■□□ 2.39
SMC4Q9NTJ3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
SMC4Q9NTJ3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SMC4Q9NTJ3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
SMC4Q9NTJ3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SMC4Q9NTJ3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC29.97■■■□□ 2.39
SMC4Q9NTJ3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC29.97■■■□□ 2.39
SMC4Q9NTJ3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SMC4Q9NTJ3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
SMC4Q9NTJ3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC29.96■■■□□ 2.39
SMC4Q9NTJ3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.96■■■□□ 2.39
SMC4Q9NTJ3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC29.96■■■□□ 2.39
SMC4Q9NTJ3 MIR4508-201ENST00000584178 70 ntBASIC29.96■■■□□ 2.39
SMC4Q9NTJ3 HLA-L-211ENST00000482052 1765 ntBASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SMC4Q9NTJ3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 LINC01124-201ENST00000409786 2117 ntBASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
SMC4Q9NTJ3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 AC011551.1-201ENST00000614101 683 ntBASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SMC4Q9NTJ3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 AC120024.1-201ENST00000562672 995 ntBASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMC4Q9NTJ3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.91■■■□□ 2.38
SMC4Q9NTJ3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC29.91■■■□□ 2.38
SMC4Q9NTJ3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC29.91■■■□□ 2.38
SMC4Q9NTJ3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMC4Q9NTJ3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMC4Q9NTJ3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC29.9■■■□□ 2.38
SMC4Q9NTJ3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC29.89■■■□□ 2.38
SMC4Q9NTJ3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
SMC4Q9NTJ3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
SMC4Q9NTJ3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
SMC4Q9NTJ3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.89■■■□□ 2.37
SMC4Q9NTJ3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 YBX1P4-201ENST00000392794 808 ntBASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC29.88■■■□□ 2.37
SMC4Q9NTJ3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC29.87■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms