Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.14■□□□□ 0.66
PDLIM3Q53GG5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PDLIM3Q53GG5 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 AL592293.1-201ENST00000502889 1188 ntBASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
PDLIM3Q53GG5 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 YBX1P4-201ENST00000392794 808 ntBASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 AC126177.7-201ENST00000547904 679 ntBASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM3Q53GG5 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.12■□□□□ 0.65
PDLIM3Q53GG5 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 AC010980.1-201ENST00000587192 1142 ntBASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 SLC6A10P-202ENST00000431994 2058 ntBASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM3Q53GG5 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 AC074183.2-201ENST00000623112 922 ntBASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM3Q53GG5 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM3Q53GG5 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM3Q53GG5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PDLIM3Q53GG5 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
PDLIM3Q53GG5 AC133552.2-201ENST00000619106 1032 ntBASIC19.08■□□□□ 0.64
PDLIM3Q53GG5 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PDLIM3Q53GG5 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PDLIM3Q53GG5 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 MIR638-201ENST00000385237 100 ntBASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM3Q53GG5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 LINC01124-201ENST00000409786 2117 ntBASIC19.06■□□□□ 0.64
PDLIM3Q53GG5 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 LINC00543-201ENST00000567234 1845 ntBASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 AC009831.1-201ENST00000580420 1582 ntBASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 AC141586.4-201ENST00000624558 1573 ntBASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.05■□□□□ 0.64
PDLIM3Q53GG5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM3Q53GG5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms