Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CMC4P56277 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CMC4P56277 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CMC4P56277 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CMC4P56277 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CMC4P56277 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CMC4P56277 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CMC4P56277 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC17.37■□□□□ 0.37
CMC4P56277 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
CMC4P56277 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC17.37■□□□□ 0.37
CMC4P56277 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 KRT125P-201ENST00000546827 989 ntBASIC17.37■□□□□ 0.37
CMC4P56277 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 AC137630.3-201ENST00000607245 391 ntBASIC17.37■□□□□ 0.37
CMC4P56277 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CMC4P56277 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CMC4P56277 SHF-207ENST00000560540 2062 ntTSL 5 BASIC17.36■□□□□ 0.37
CMC4P56277 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CMC4P56277 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CMC4P56277 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.36■□□□□ 0.37
CMC4P56277 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.36■□□□□ 0.37
CMC4P56277 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.36■□□□□ 0.37
CMC4P56277 MIR4281-201ENST00000580852 62 ntBASIC17.36■□□□□ 0.37
CMC4P56277 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.36■□□□□ 0.37
CMC4P56277 AC142381.3-201ENST00000568208 1670 ntBASIC17.36■□□□□ 0.37
CMC4P56277 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CMC4P56277 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.35■□□□□ 0.37
CMC4P56277 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.35■□□□□ 0.37
CMC4P56277 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.35■□□□□ 0.37
CMC4P56277 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CMC4P56277 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.35■□□□□ 0.37
CMC4P56277 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CMC4P56277 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.34■□□□□ 0.37
CMC4P56277 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC17.34■□□□□ 0.37
CMC4P56277 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.34■□□□□ 0.37
CMC4P56277 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CMC4P56277 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC17.34■□□□□ 0.37
CMC4P56277 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC17.34■□□□□ 0.37
CMC4P56277 AL161729.1-201ENST00000604104 1402 ntBASIC17.34■□□□□ 0.37
CMC4P56277 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC17.34■□□□□ 0.37
CMC4P56277 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CMC4P56277 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CMC4P56277 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CMC4P56277 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CMC4P56277 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
CMC4P56277 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.37
CMC4P56277 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CMC4P56277 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CMC4P56277 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.33■□□□□ 0.36
CMC4P56277 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CMC4P56277 LSM7-203ENST00000585409 512 ntTSL 2 BASIC17.33■□□□□ 0.36
CMC4P56277 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CMC4P56277 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CMC4P56277 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CMC4P56277 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CMC4P56277 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CMC4P56277 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.31■□□□□ 0.36
CMC4P56277 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC17.31■□□□□ 0.36
CMC4P56277 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC17.31■□□□□ 0.36
CMC4P56277 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CMC4P56277 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.31■□□□□ 0.36
CMC4P56277 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CMC4P56277 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CMC4P56277 AC022211.4-201ENST00000625094 2161 ntBASIC17.3■□□□□ 0.36
CMC4P56277 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CMC4P56277 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CMC4P56277 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CMC4P56277 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CMC4P56277 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CMC4P56277 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CMC4P56277 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CMC4P56277 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CMC4P56277 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms