Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 AC137630.3-201ENST00000607245 391 ntBASIC25.19■■□□□ 1.62
ZNF560Q96MR9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
ZNF560Q96MR9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 SLC6A10P-202ENST00000431994 2058 ntBASIC25.18■■□□□ 1.62
ZNF560Q96MR9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.18■■□□□ 1.62
ZNF560Q96MR9 KRT125P-201ENST00000546827 989 ntBASIC25.18■■□□□ 1.62
ZNF560Q96MR9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 AC239859.2-201ENST00000444165 318 ntBASIC25.17■■□□□ 1.62
ZNF560Q96MR9 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.17■■□□□ 1.62
ZNF560Q96MR9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
ZNF560Q96MR9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
ZNF560Q96MR9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.15■■□□□ 1.62
ZNF560Q96MR9 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
ZNF560Q96MR9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.15■■□□□ 1.62
ZNF560Q96MR9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.15■■□□□ 1.62
ZNF560Q96MR9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
ZNF560Q96MR9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
ZNF560Q96MR9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
ZNF560Q96MR9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
ZNF560Q96MR9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
ZNF560Q96MR9 GUSBP5-201ENST00000418136 578 ntBASIC25.13■■□□□ 1.61
ZNF560Q96MR9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.13■■□□□ 1.61
ZNF560Q96MR9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 MIR6089-201ENST00000616698 64 ntBASIC25.12■■□□□ 1.61
ZNF560Q96MR9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
ZNF560Q96MR9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
ZNF560Q96MR9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
ZNF560Q96MR9 AC021242.3-201ENST00000607598 1377 ntBASIC25.1■■□□□ 1.61
ZNF560Q96MR9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.1■■□□□ 1.61
ZNF560Q96MR9 MIR4787-201ENST00000607364 84 ntBASIC25.1■■□□□ 1.61
ZNF560Q96MR9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
ZNF560Q96MR9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.08■■□□□ 1.61
ZNF560Q96MR9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
ZNF560Q96MR9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
ZNF560Q96MR9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.06■■□□□ 1.6
ZNF560Q96MR9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
ZNF560Q96MR9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC25.06■■□□□ 1.6
ZNF560Q96MR9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
ZNF560Q96MR9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
ZNF560Q96MR9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.05■■□□□ 1.6
ZNF560Q96MR9 AF131216.4-201ENST00000638924 1588 ntBASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms