Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VRK3Q8IV63 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
VRK3Q8IV63 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VRK3Q8IV63 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.06■■□□□ 1.28
VRK3Q8IV63 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
VRK3Q8IV63 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
VRK3Q8IV63 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VRK3Q8IV63 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VRK3Q8IV63 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VRK3Q8IV63 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VRK3Q8IV63 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VRK3Q8IV63 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.05■■□□□ 1.28
VRK3Q8IV63 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
VRK3Q8IV63 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
VRK3Q8IV63 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.04■■□□□ 1.28
VRK3Q8IV63 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
VRK3Q8IV63 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
VRK3Q8IV63 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
VRK3Q8IV63 AL592295.1-201ENST00000400984 884 ntBASIC23.03■■□□□ 1.28
VRK3Q8IV63 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
VRK3Q8IV63 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.03■■□□□ 1.28
VRK3Q8IV63 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
VRK3Q8IV63 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
VRK3Q8IV63 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
VRK3Q8IV63 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.03■■□□□ 1.28
VRK3Q8IV63 AC103834.1-201ENST00000520383 144 ntBASIC23.02■■□□□ 1.28
VRK3Q8IV63 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.02■■□□□ 1.28
VRK3Q8IV63 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.02■■□□□ 1.28
VRK3Q8IV63 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.02■■□□□ 1.28
VRK3Q8IV63 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
VRK3Q8IV63 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VRK3Q8IV63 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VRK3Q8IV63 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VRK3Q8IV63 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.01■■□□□ 1.27
VRK3Q8IV63 KRT8P33-201ENST00000508125 1423 ntBASIC23■■□□□ 1.27
VRK3Q8IV63 MIR6089-201ENST00000616698 64 ntBASIC23■■□□□ 1.27
VRK3Q8IV63 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
VRK3Q8IV63 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23■■□□□ 1.27
VRK3Q8IV63 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VRK3Q8IV63 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.99■■□□□ 1.27
VRK3Q8IV63 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VRK3Q8IV63 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
VRK3Q8IV63 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.99■■□□□ 1.27
VRK3Q8IV63 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VRK3Q8IV63 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.99■■□□□ 1.27
VRK3Q8IV63 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
VRK3Q8IV63 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.99■■□□□ 1.27
VRK3Q8IV63 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VRK3Q8IV63 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.98■■□□□ 1.27
VRK3Q8IV63 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
VRK3Q8IV63 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VRK3Q8IV63 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
VRK3Q8IV63 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
VRK3Q8IV63 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.97■■□□□ 1.27
VRK3Q8IV63 MIR4508-201ENST00000584178 70 ntBASIC22.96■■□□□ 1.27
VRK3Q8IV63 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
VRK3Q8IV63 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
VRK3Q8IV63 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VRK3Q8IV63 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
VRK3Q8IV63 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VRK3Q8IV63 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.95■■□□□ 1.26
VRK3Q8IV63 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
VRK3Q8IV63 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VRK3Q8IV63 AP003733.4-201ENST00000623785 1697 ntBASIC22.94■■□□□ 1.26
VRK3Q8IV63 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VRK3Q8IV63 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VRK3Q8IV63 AC022616.5-201ENST00000518796 181 ntBASIC22.94■■□□□ 1.26
VRK3Q8IV63 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
VRK3Q8IV63 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.94■■□□□ 1.26
VRK3Q8IV63 AC090877.2-201ENST00000558441 1738 ntBASIC22.94■■□□□ 1.26
VRK3Q8IV63 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
VRK3Q8IV63 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.93■■□□□ 1.26
VRK3Q8IV63 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
VRK3Q8IV63 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
VRK3Q8IV63 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
VRK3Q8IV63 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms