Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BHLHE23-202ENST00000612929 1109 ntBASIC20.58■□□□□ 0.89
LMX1BO60663 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1BO60663 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.58■□□□□ 0.88
LMX1BO60663 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LMX1BO60663 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LMX1BO60663 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.57■□□□□ 0.88
LMX1BO60663 MIR3960-201ENST00000583311 91 ntBASIC20.57■□□□□ 0.88
LMX1BO60663 AC026202.3-201ENST00000600805 1127 ntBASIC20.57■□□□□ 0.88
LMX1BO60663 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LMX1BO60663 AP003733.4-201ENST00000623785 1697 ntBASIC20.57■□□□□ 0.88
LMX1BO60663 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LMX1BO60663 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LMX1BO60663 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1BO60663 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1BO60663 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LMX1BO60663 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.56■□□□□ 0.88
LMX1BO60663 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LMX1BO60663 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.55■□□□□ 0.88
LMX1BO60663 AL451085.2-201ENST00000605085 799 ntBASIC20.55■□□□□ 0.88
LMX1BO60663 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LMX1BO60663 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.54■□□□□ 0.88
LMX1BO60663 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.54■□□□□ 0.88
LMX1BO60663 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1BO60663 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.53■□□□□ 0.88
LMX1BO60663 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LMX1BO60663 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1BO60663 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.53■□□□□ 0.88
LMX1BO60663 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LMX1BO60663 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.53■□□□□ 0.88
LMX1BO60663 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1BO60663 RP9P-202ENST00000450133 1212 ntBASIC20.53■□□□□ 0.88
LMX1BO60663 AC074183.2-201ENST00000623112 922 ntBASIC20.53■□□□□ 0.88
LMX1BO60663 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LMX1BO60663 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1BO60663 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.53■□□□□ 0.88
LMX1BO60663 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1BO60663 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LMX1BO60663 DUX4L9-201ENST00000449051 1259 ntBASIC20.52■□□□□ 0.88
LMX1BO60663 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LMX1BO60663 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.52■□□□□ 0.88
LMX1BO60663 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1BO60663 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1BO60663 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.51■□□□□ 0.87
LMX1BO60663 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1BO60663 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1BO60663 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LMX1BO60663 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
LMX1BO60663 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.5■□□□□ 0.87
LMX1BO60663 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.5■□□□□ 0.87
LMX1BO60663 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1BO60663 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.5■□□□□ 0.87
LMX1BO60663 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.5■□□□□ 0.87
LMX1BO60663 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LMX1BO60663 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1BO60663 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1BO60663 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1BO60663 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1BO60663 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.49■□□□□ 0.87
LMX1BO60663 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LMX1BO60663 AC093536.1-201ENST00000569153 554 ntBASIC20.49■□□□□ 0.87
LMX1BO60663 AC010980.1-201ENST00000587192 1142 ntBASIC20.49■□□□□ 0.87
LMX1BO60663 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.49■□□□□ 0.87
LMX1BO60663 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1BO60663 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LMX1BO60663 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.48■□□□□ 0.87
LMX1BO60663 AC139795.1-202ENST00000500444 432 ntBASIC20.48■□□□□ 0.87
LMX1BO60663 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1BO60663 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LMX1BO60663 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.48■□□□□ 0.87
LMX1BO60663 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms