Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB3O15347 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB3O15347 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB3O15347 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HMGB3O15347 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB3O15347 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB3O15347 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HMGB3O15347 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB3O15347 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB3O15347 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB3O15347 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB3O15347 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB3O15347 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HMGB3O15347 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB3O15347 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HMGB3O15347 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB3O15347 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB3O15347 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGB3O15347 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB3O15347 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HMGB3O15347 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGB3O15347 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGB3O15347 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGB3O15347 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGB3O15347 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB3O15347 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB3O15347 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB3O15347 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGB3O15347 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HMGB3O15347 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB3O15347 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGB3O15347 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB3O15347 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HMGB3O15347 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HMGB3O15347 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC18.78■□□□□ 0.6
HMGB3O15347 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB3O15347 AC097639.1-201ENST00000565519 1891 ntBASIC18.77■□□□□ 0.6
HMGB3O15347 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGB3O15347 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HMGB3O15347 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HMGB3O15347 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB3O15347 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.77■□□□□ 0.59
HMGB3O15347 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.77■□□□□ 0.59
HMGB3O15347 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HMGB3O15347 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGB3O15347 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 AC138932.1-201ENST00000534164 6830 ntBASIC18.76■□□□□ 0.59
HMGB3O15347 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HMGB3O15347 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB3O15347 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGB3O15347 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 SUZ12P1-203ENST00000578195 985 ntBASIC18.75■□□□□ 0.59
HMGB3O15347 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB3O15347 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB3O15347 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB3O15347 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB3O15347 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB3O15347 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HMGB3O15347 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB3O15347 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB3O15347 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
HMGB3O15347 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HMGB3O15347 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB3O15347 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB3O15347 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HMGB3O15347 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HMGB3O15347 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB3O15347 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGB3O15347 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB3O15347 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms